A practical guide to evaluating colocalization in biological microscopy

KW Dunn, MM Kamocka… - American Journal of …, 2011 - journals.physiology.org
Fluorescence microscopy is one of the most powerful tools for elucidating the cellular
functions of proteins and other molecules. In many cases, the function of a molecule can be …

Image co-localization–co-occurrence versus correlation

JS Aaron, AB Taylor, TL Chew - Journal of cell science, 2018 - journals.biologists.com
Fluorescence image co-localization analysis is widely utilized to suggest biomolecular
interaction. However, there exists some confusion as to its correct implementation and …

Quantifying colocalization by correlation: the Pearson correlation coefficient is superior to the Mander's overlap coefficient

J Adler, I Parmryd - Cytometry Part A, 2010 - Wiley Online Library
The Pearson correlation coefficient (PCC) and the Mander's overlap coefficient (MOC) are
used to quantify the degree of colocalization between fluorophores. The MOC was …

Three-dimensional architecture and biogenesis of membrane structures associated with hepatitis C virus replication

I Romero-Brey, A Merz, A Chiramel, JY Lee… - PLoS …, 2012 - journals.plos.org
All positive strand RNA viruses are known to replicate their genomes in close association
with intracellular membranes. In case of the hepatitis C virus (HCV), a member of the family …

Microscale geometrical modulation of PIEZO1 mediated mechanosensing through cytoskeletal redistribution

HJ Wang, Y Wang, SS Mirjavadi, T Andersen… - Nature …, 2024 - nature.com
The microgeometry of the cellular microenvironment profoundly impacts cellular behaviors,
yet the link between it and the ubiquitously expressed mechanosensitive ion channel …

Functional clustering of dendritic activity during decision-making

A Kerlin, B Mohar, D Flickinger, BJ MacLennan… - Elife, 2019 - elifesciences.org
The active properties of dendrites can support local nonlinear operations, but previous
imaging and electrophysiological measurements have produced conflicting views regarding …

LSD1 activation promotes inducible EMT programs and modulates the tumour microenvironment in breast cancer

T Boulding, RD McCuaig, A Tan, K Hardy, F Wu… - Scientific reports, 2018 - nature.com
Complex regulatory networks control epithelial-to-mesenchymal transition (EMT) but the
underlying epigenetic control is poorly understood. Lysine-specific demethylase 1 (LSD1) is …

Colocalization analysis in fluorescence micrographs: verification of a more accurate calculation of pearson's correlation coefficient

AL Barlow, A MacLeod, S Noppen… - Microscopy and …, 2010 - cambridge.org
One of the most routine uses of fluorescence microscopy is colocalization, ie, the
demonstration of a relationship between pairs of biological molecules. Frequently this is …

Bcl‐2 proteins regulate mitophagy in lipopolysaccharide‐induced acute lung injury via PINK1/Parkin signaling pathway

Z Zhang, Z Chen, R Liu, Q Liang, Z Peng… - Oxidative Medicine …, 2020 - Wiley Online Library
Mitophagy is involved in sepsis‐induced acute lung injury (ALI). Bcl‐2 family proteins play
an important role in mitochondrial homeostasis. However, whether targeting Bcl‐2 proteins …

Recent advances in quantitative colocalization analysis: focus on neuroscience

V Zinchuk, O Grossenbacher-Zinchuk - Progress in histochemistry and …, 2009 - Elsevier
Quantitative colocalization analysis is an advanced digital imaging tool to characterize the
spatial expression of molecules of interest in immunofluorescence images obtained using …