Isobaric labeling-based relative quantification in shotgun proteomics

N Rauniyar, JR Yates III - Journal of proteome research, 2014 - ACS Publications
Mass spectrometry plays a key role in relative quantitative comparisons of proteins in order
to understand their functional role in biological systems upon perturbation. In this review, we …

Glycans and glycoproteins as specific biomarkers for cancer

MJ Kailemia, D Park, CB Lebrilla - Analytical and bioanalytical chemistry, 2017 - Springer
Protein glycosylation and other post-translational modifications are involved in potentially all
aspects of human growth and development. Defective glycosylation has adverse effects on …

An insight into iTRAQ: where do we stand now?

C Evans, J Noirel, SY Ow, M Salim… - Analytical and …, 2012 - Springer
The iTRAQ (isobaric tags for relative and absolute quantification) technique is widely
employed in proteomic workflows requiring relative quantification. Here, we review the …

Analysis of the plasma proteome using iTRAQ and TMT‐based Isobaric labeling

R Moulder, SD Bhosale, DR Goodlett… - Mass spectrometry …, 2018 - Wiley Online Library
Over the past decade, chemical labeling with isobaric tandem mass tags, such as isobaric
tags for relative and absolute quantification reagents (iTRAQ) and tandem mass tag (TMT) …

Glycopeptide enrichment and separation for protein glycosylation analysis

S Ongay, A Boichenko, N Govorukhina… - Journal of separation …, 2012 - Wiley Online Library
Protein glycosylation plays key roles in many biological processes. In addition, alterations in
protein glycosylation have been related to different diseases, as well as may affect the …

Saliva proteome research: current status and future outlook

BL Schulz, J Cooper-White… - Critical reviews in …, 2013 - Taylor & Francis
Human saliva harbours proteins of clinical relevance and about 30% of blood proteins are
also present in saliva. This highlights that saliva can be used for clinical applications just as …

Glycoprotein biomarker panel for pancreatic cancer discovered by quantitative proteomics analysis

S Nie, A Lo, J Wu, J Zhu, Z Tan… - Journal of proteome …, 2014 - ACS Publications
Pancreatic cancer is a lethal disease where specific early detection biomarkers would be
very valuable to improve outcomes in patients. Many previous studies have compared …

Absolute quantitation of immunoglobulin G and its glycoforms using multiple reaction monitoring

Q Hong, CB Lebrilla, S Miyamoto… - Analytical chemistry, 2013 - ACS Publications
Studies aimed toward glycan biomarker discovery have focused on glycan characterization
by the global profiling of released glycans. Site-specific glycosylation analysis is less …

Glycoproteomics enabled by tagging sialic acid-or galactose-terminated glycans

TNC Ramya, E Weerapana, BF Cravatt… - …, 2013 - academic.oup.com
In this paper, we present two complementary strategies for enrichment of glycoproteins on
living cells that combine the desirable attributes of “robust enrichment” afforded by covalent …

Semi-automated identification of N-Glycopeptides by hydrophilic interaction chromatography, nano-reverse-phase LC–MS/MS, and glycan database search

P Pompach, KB Chandler, R Lan… - Journal of Proteome …, 2012 - ACS Publications
Glycoproteins fulfill many indispensable biological functions, and changes in protein
glycosylation have been observed in various diseases. Improved analytical methods are …