Cisplatin resistance-related multi-omics differences and the establishment of machine learning models

Q Sui, Z Chen, Z Hu, Y Huang, J Liang, G Bi… - Journal of translational …, 2022 - Springer
Objectives Platinum-based chemotherapies are currently the first-line treatment of non-small
cell lung cancer. This study will improve our understanding of the causes of resistance to …

Identifying the “stripe” transcription factors and cooperative binding related to DNA methylation

X Luo, Q Zou - Communications Biology, 2024 - nature.com
DNA methylation plays a critical role in gene regulation by modulating the DNA binding of
transcription factors (TFs). This study integrates TFs' ChIP-seq profiles with WGBS profiles to …

Molecular pathological approach to cancer epigenomics and its clinical application

Y Kanai - Pathology International, 2024 - Wiley Online Library
Careful microscopic observation of histopathological specimens, accumulation of large
numbers of high‐quality tissue specimens, and analysis of molecular pathology in relation to …

Context-dependent CpG methylation directs cell-specific binding of transcription factor ZBTB38

C Marchal, PA Defossez, B Miotto - Epigenetics, 2022 - Taylor & Francis
ABSTRACT DNA methylation on CpGs regulates transcription in mammals, both by
decreasing the binding of methylation-repelled factors and by increasing the binding of …

The proximity-based protein interactome and regulatory logics of the transcription factor p65 NF-κB/RELA

L Leib, J Juli, L Jurida, C Mayr-Buro, J Priester… - EMBO …, 2025 - embopress.org
The protein interactome of p65/RELA, the most active subunit of the transcription factor (TF)
NF-κB, has not been previously determined in living cells. Using p65-miniTurbo fusion …

[HTML][HTML] Ubiquitin ligases and medulloblastoma: genetic markers of the four consensus subgroups identified through transcriptome datasets

J Vriend, M Rastegar - Biochimica et Biophysica Acta (BBA)-Molecular …, 2020 - Elsevier
The ubiquitin proteasome system regulates key cellular processes in normal and in cancer
cells. Herein, we review published data on the role of ubiquitin ligases in the four major …

Identification of differentially methylated regions associated with both liver fibrosis and hepatocellular carcinoma

S Kurokawa, T Kobori, M Yoneda, Y Ogawa… - BMC …, 2024 - Springer
Background Liver fibrosis is a major risk factor for hepatocellular carcinoma (HCC). We have
previously reported that differentially methylated regions (DMRs) are correlated with the …

[HTML][HTML] Prognostication of early-onset endometrioid endometrial cancer based on genome-wide DNA methylation profiles

T Hirano, E Arai, M Fujimoto, Y Nakayama… - Journal of …, 2022 - ncbi.nlm.nih.gov
Objective The aim of this study was to establish criteria that would indicate whether fertility
preservation therapy would likely be safe for patients aged 40 years or less with …

Population history and genome wide association studies of birth weight in a native high altitude Ladakhi population

S Bhandari, P Dolma, M Mukerji, B Prasher… - Plos one, 2022 - journals.plos.org
Pathological low birth weight due to fetal growth restriction (FGR) is an important predictor of
adverse obstetric and neonatal outcomes. It is more common amongst native lowlanders …

ZBTB38 is dispensable for antibody responses

R Wong, D Bhattacharya - PLoS One, 2020 - journals.plos.org
Members of the broad complex, tram track, bric-a-brac and zinc finger (BTB-ZF) family of
transcription factors, such as BCL-6, ZBTB20, and ZBTB32, regulate antigen-specific B cell …