Single-particle cryo-electron microscopy: Mathematical theory, computational challenges, and opportunities

T Bendory, A Bartesaghi… - IEEE signal processing …, 2020 - ieeexplore.ieee.org
In recent years, an abundance of new molecular structures have been elucidated using cryo-
electron microscopy (cryo-EM), largely due to advances in hardware technology and data …

Emerging themes in CryoEM─ Single particle analysis image processing

JL Vilas, JM Carazo, COS Sorzano - Chemical Reviews, 2022 - ACS Publications
Cryo-electron microscopy (CryoEM) has become a vital technique in structural biology. It is
an interdisciplinary field that takes advantage of advances in biochemistry, physics, and …

[PDF][PDF] STOPGAP: an open-source package for template matching, subtomogram alignment and classification

W Wan, S Khavnekar, J Wagner - Acta Crystallographica Section D …, 2024 - journals.iucr.org
Cryo-electron tomography (cryo-ET) enables molecular-resolution 3D imaging of complex
biological specimens such as viral particles, cellular sections and, in some cases, whole …

Hands on methods for high resolution cryo-electron microscopy structures of heterogeneous macromolecular complexes

M Serna - Frontiers in molecular biosciences, 2019 - frontiersin.org
Electron microscopy of frozen hydrated samples (cryo-EM) is a powerful structural technique
that allows the direct study of functional macromolecular complexes in an almost …

[HTML][HTML] SIMPLE 3.0. Stream single-particle cryo-EM analysis in real time

J Caesar, CF Reboul, C Machello, S Kiesewetter… - Journal of structural …, 2020 - Elsevier
We here introduce the third major release of the SIMPLE (Single-particle IMage Processing
Linux Engine) open-source software package for analysis of cryogenic transmission electron …

High-resolution cryo-EM: the nuts and bolts

D Elmlund, SN Le, H Elmlund - Current opinion in structural biology, 2017 - Elsevier
Highlights•Near-atomic resolution cryo-EM structures of challenging targets can now be
obtained.•Advances in sample preparation increases chance of high-resolution structure …

Single‐particle cryo‐EM—Improved ab initio 3D reconstruction with SIMPLE/PRIME

CF Reboul, M Eager, D Elmlund, H Elmlund - Protein Science, 2018 - Wiley Online Library
Cryogenic electron microscopy (cryo‐EM) and single‐particle analysis now enables the
determination of high‐resolution structures of macromolecular assemblies that have resisted …

Sparse Fourier backpropagation in cryo-EM reconstruction

D Kimanius, K Jamali… - Advances in Neural …, 2022 - proceedings.neurips.cc
Electron cryo-microscopy (cryo-EM) is a powerful method for investigating the structures of
protein molecules, with important implications for understanding the molecular processes of …

Machine learning for structure determination in single-particle cryo-electron microscopy: A systematic review

JG Wu, Y Yan, DX Zhang, BW Liu… - … on Neural Networks …, 2021 - ieeexplore.ieee.org
Recently, single-particle cryo-electron microscopy (cryo-EM) has become an indispensable
method for determining macromolecular structures at high resolution to deeply explore the …

SINGLE: Atomic-resolution structure identification of nanocrystals by graphene liquid cell EM

CF Reboul, J Heo, C Machello, S Kiesewetter… - Science …, 2021 - science.org
Analysis of the three-dimensional (3D) structures of nanocrystals with solution-phase
transmission electron microscopy is beginning to reveal their unique physiochemical …