Nine (not so simple) steps: a practical guide to using machine learning in microbial ecology

C Walsh, E Stallard-Olivera, N Fierer - Mbio, 2024 - Am Soc Microbiol
Due to the complex nature of microbiome data, the field of microbial ecology has many
current and potential uses for machine learning (ML) modeling. With the increased use of …

[HTML][HTML] Feedstock-dependent antibiotic resistance gene patterns and expression profiles in industrial scale biogas plants revealed by meta-omics technology

R Wirth, P Shetty, Z Bagi, KL Kovács, G Maróti - Water Research, 2025 - Elsevier
This study investigated antimicrobial resistance in the anaerobic digesters of two industrial-
scale biogas plants processing agricultural biomass and municipal wastewater sludge. A …

Simultaneous biogas upgrading and single cell protein production using hydrogen oxidizing bacteria

R Li, YF Jiang, JH Huang, K Luo, XL Fan… - Chemical Engineering …, 2024 - Elsevier
CO 2, a primary byproduct of anaerobic digestion, significantly reduces the calorific value of
biogas, necessitating its enhancement through biogas upgrading to increase the CH 4 …

A Novel Sulfatase for Acesulfame Degradation in Wastewater Treatment Plants as Evidenced from Shinella Strains

Y Liu, T Rohwerder, ML Bonatelli… - Environmental …, 2024 - ACS Publications
The artificial sweetener acesulfame is a persistent pollutant in wastewater worldwide. So far,
only a few bacterial isolates were recently found to degrade acesulfame efficiently. In Bosea …

Carbon/nitrogen flows and associated microbial communities in full-scale foodwaste treatment plants

H Jiang, W Gao, Q Lu, S Wang - Bioresource Technology, 2023 - Elsevier
Microorganisms play key roles in the conversion of organic matter in foodwaste. However,
both the microbially-mediated element (carbon/C and nitrogen/N) flows and associated …

Viral Auxiliary Roles in Hydrolytic and Biosynthetic Metabolism Regulate Prokaryotic Microbial Interactions in Anaerobic Digestion

X Guo, P Yu, J Guo, HP Zhao, CY Lai - Water Research, 2025 - Elsevier
Anaerobic digestion (AD) viruses have gained recognition as significant regulators of
microbial interactions within AD communities, yet their ecological roles remain largely …

Self-adaptation of tolerant microalgae-bacterial consortia in landfill leachate: Simultaneous achievement of efficient nitrogen removal and value-added utilization

Y Geng, CA Lian, L Yang, SG Pavlostathis, Z Qiu… - Chemical Engineering …, 2024 - Elsevier
Effectively and inexpensively removing nitrogen from raw landfill leachate is challenging
due to high nitrogen levels that hinder common microorganisms and microalgae survival. In …

[HTML][HTML] Mechanistic understanding of acclimation and energy metabolism of acetoclastic methanogens under different substrate to microorganism ratios

H Chang, B Du, K He, Q Yin, G Wu - Environmental Research, 2024 - Elsevier
Mechanistic understanding of acetoclastic methanogenesis is pivotal for optimizing
anaerobic digestion for efficient methane production. In this study, two different operational …

Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics

J Hassa, TJ Tubbesing, I Maus, R Heyer, D Benndorf… - Microorganisms, 2023 - mdpi.com
The current focus on renewable energy in global policy highlights the importance of
methane production from biomass through anaerobic digestion (AD). To improve biomass …

Challenges associated with high-solid anaerobic digestion

E Perman - Acta Universitatis Agriculturae Sueciae, 2024 - pub.epsilon.slu.se
Biogas production through anaerobic digestion (AD) enables use of resources contained in
organic waste streams to produce renewable energy and biofertiliser. For treatment of …