Genome-wide discovery of pre-miRNAs: comparison of recent approaches based on machine learning

LA Bugnon, C Yones, DH Milone… - Briefings in …, 2021 - academic.oup.com
Motivation The genome-wide discovery of microRNAs (miRNAs) involves identifying
sequences having the highest chance of being a novel miRNA precursor (pre-miRNA) …

Robust and efficient COVID-19 detection techniques: A machine learning approach

MM Hasan, SB Murtaz, MU Islam, MJ Sadeq, J Uddin - PLoS One, 2022 - journals.plos.org
The devastating impact of the Severe Acute Respiratory Syndrome-Coronavirus 2 (SARS-
CoV-2) pandemic almost halted the global economy and is responsible for 6 million deaths …

miRe2e: a full end-to-end deep model based on transformers for prediction of pre-miRNAs

J Raad, LA Bugnon, DH Milone, G Stegmayer - Bioinformatics, 2022 - academic.oup.com
Motivation MicroRNAs (miRNAs) are small RNA sequences with key roles in the regulation
of gene expression at post-transcriptional level in different species. Accurate prediction of …

[HTML][HTML] Deep Learning for the discovery of new pre-miRNAs: Helping the fight against COVID-19

LA Bugnon, J Raad, GA Merino, C Yones, F Ariel… - Machine Learning with …, 2021 - Elsevier
Abstract The Severe Acute Respiratory Syndrome-Coronavirus 2 (SARS-CoV-2) has been
recently found responsible for the pandemic outbreak of a novel coronavirus disease …

High precision in microRNA prediction: A novel genome-wide approach with convolutional deep residual networks

C Yones, J Raad, LA Bugnon, DH Milone… - Computers in Biology …, 2021 - Elsevier
MicroRNAs (miRNAs) are small non-coding RNAs that have a key role in the regulation of
gene expression. The importance of miRNAs is widely acknowledged by the community …

HextractoR: an R package for automatic extraction of hairpins from genome-wide data

C Yones, N Macchiaroli, L Kamenetzky, G Stegmayer… - bioRxiv, 2020 - biorxiv.org
Extracting stem-loop sequences (hairpins) from genome-wide data is very important
nowadays for some data mining tasks in bioinformatics. The genome preprocessing is very …