Basic and applied uses of genome‐scale metabolic network reconstructions of Escherichia coli
The genome‐scale model (GEM) of metabolism in the bacterium Escherichia coli K‐12 has
been in development for over a decade and is now in wide use. GEM‐enabled studies of E …
been in development for over a decade and is now in wide use. GEM‐enabled studies of E …
Computational approaches to design and test plant synthetic metabolic pathways
A Küken, Z Nikoloski - Plant Physiology, 2019 - academic.oup.com
Successfully designed and implemented plant-specific synthetic metabolic pathways hold
promise to increase crop yield and nutritional value. Advances in synthetic biology have …
promise to increase crop yield and nutritional value. Advances in synthetic biology have …
Critical assessment of genome-scale metabolic networks: the need for a unified standard
A Ravikrishnan, K Raman - Briefings in bioinformatics, 2015 - academic.oup.com
Genome-scale metabolic networks have been reconstructed for several organisms. These
metabolic networks provide detailed information about the metabolism inside the cells …
metabolic networks provide detailed information about the metabolism inside the cells …
Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production
Highlights•Mathematical modeling can help to better understand microalgae metabolism.•A
better understanding of metabolism can guide optimization of biofuels production.•The …
better understanding of metabolism can guide optimization of biofuels production.•The …
Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence?
Arguably, the biggest challenge of modern plant systems biology lies in predicting the
performance of plant species, and crops in particular, upon different intracellular and …
performance of plant species, and crops in particular, upon different intracellular and …
Computational prediction of essential metabolic genes using constraint-based approaches
G Basler - Gene Essentiality: Methods and Protocols, 2015 - Springer
In this chapter, we describe the application of constraint-based modeling to predict the
impact of gene deletions on a metabolic phenotype. The metabolic reactions taking place …
impact of gene deletions on a metabolic phenotype. The metabolic reactions taking place …
[PDF][PDF] Metabolic modeling under non-balanced growth. Application to microalgae for biofuels production
C Baroukh - 2014 - researchgate.net
Unicellular photoautotrophic microorganisms convert light photons into cell energy and fix
carbon dioxide (CO2). These eukaryotes (microalgae) or prokaryotes (cyanobacteria) …
carbon dioxide (CO2). These eukaryotes (microalgae) or prokaryotes (cyanobacteria) …
Modeling Metabolic Networks and their Environment Interaction
MB Abarca - 2017 - theses.hal.science
Metabolic networks allows to the user the construction of detailed models using high
resolution 'omics datasets. In particular, Constrained Based Models (CBMs) are used to …
resolution 'omics datasets. In particular, Constrained Based Models (CBMs) are used to …
Les effets cardioprotecteurs de peptides dérivés des sécrétagogues de l'hormone de croissance dans le modèle d'ischémie-reperfusion du myocarde murin
DN Huynh - 2019 - papyrus.bib.umontreal.ca
Les peptides sécrétagogues de l'hormone de croissance (GHRP) sont des peptides
synthétiques qui stimulent la sécrétion de l'hormone de croissance (HC) après la liaison …
synthétiques qui stimulent la sécrétion de l'hormone de croissance (HC) après la liaison …
OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques
Abstract Constraint Based Methods had been successfully used to simulate genome-scale
metabolic behaviors over a range of experimental conditions. In most applications …
metabolic behaviors over a range of experimental conditions. In most applications …