Toward the solution of the protein structure prediction problem

R Pearce, Y Zhang - Journal of Biological Chemistry, 2021 - ASBMB
Since Anfinsen demonstrated that the information encoded in a protein's amino acid
sequence determines its structure in 1973, solving the protein structure prediction problem …

Principles of protein− protein interactions: what are the preferred ways for proteins to interact?

O Keskin, A Gursoy, B Ma, R Nussinov - Chemical reviews, 2008 - ACS Publications
Proteins are the working horse of the cellular machinery. They are responsible for diverse
functions ranging from molecular motors to signaling. They catalyze reactions, transport …

I-TASSER: a unified platform for automated protein structure and function prediction

A Roy, A Kucukural, Y Zhang - Nature protocols, 2010 - nature.com
The iterative threading assembly refinement (I-TASSER) server is an integrated platform for
automated protein structure and function prediction based on the sequence-to-structure-to …

The architecture of the spliceosomal U4/U6. U5 tri-snRNP

THD Nguyen, WP Galej, X Bai, CG Savva, AJ Newman… - Nature, 2015 - nature.com
Abstract U4/U6. U5 tri-snRNP is a 1.5-megadalton pre-assembled spliceosomal complex
comprising U5 small nuclear RNA (snRNA), extensively base-paired U4/U6 snRNAs and …

[HTML][HTML] The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis

F Willmund, M del Alamo, S Pechmann, T Chen… - Cell, 2013 - cell.com
In eukaryotic cells a molecular chaperone network associates with translating ribosomes,
assisting the maturation of emerging nascent polypeptides. Hsp70 is perhaps the major …

A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction

R Yan, D Xu, J Yang, S Walker, Y Zhang - Scientific reports, 2013 - nature.com
Protein sequence alignment is essential for template-based protein structure prediction and
function annotation. We collect 20 sequence alignment algorithms, 10 published and 10 …

Protein structure prediction: when is it useful?

Y Zhang - Current opinion in structural biology, 2009 - Elsevier
Computationally predicted three-dimensional structure of protein molecules has
demonstrated the usefulness in many areas of biomedicine, ranging from approximate …

[图书][B] From protein structure to function with bioinformatics

DJ Rigden, DJ Rigden - 2009 - Springer
With the success of an expanding array of genome sequencing projects, the number of
known protein sequences has been increasing exponentially. However, the sequences on …

Multiscale models quantifying yeast physiology: towards a whole-cell model

H Lu, EJ Kerkhoven, J Nielsen - Trends in Biotechnology, 2022 - cell.com
The yeast Saccharomyces cerevisiae is widely used as a cell factory and as an important
eukaryal model organism for studying cellular physiology related to human health and …

Recent progress of protein tertiary structure prediction

Q Wuyun, Y Chen, Y Shen, Y Cao, G Hu, W Cui, J Gao… - Molecules, 2024 - mdpi.com
The prediction of three-dimensional (3D) protein structure from amino acid sequences has
stood as a significant challenge in computational and structural bioinformatics for decades …