Next generation sequencing and omics in cucumber (Cucumis sativus L.) breeding directed research

M Pawełkowicz, K Zieliński, D Zielińska, W Pląder… - Plant Science, 2016 - Elsevier
In the post-genomic era the availability of genomic tools and resources is leading us to novel
generation methods in plant breeding, as they facilitate the study of the genotype and its …

The Genome Sequence of the North-European Cucumber (Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

R Wóycicki, J Witkowicz, P Gawroński, J Dąbrowska… - PloS one, 2011 - journals.plos.org
Cucumber (Cucumis sativus L.), a widely cultivated crop, has originated from Eastern
Himalayas and secondary domestication regions includes highly divergent climate …

A high-quality cucumber genome assembly enhances computational comparative genomics

P Osipowski, M Pawełkowicz, M Wojcieszek… - Molecular Genetics and …, 2020 - Springer
Genetic variation is expressed by the presence of polymorphisms in compared genomes of
individuals that can be transferred to next generations. The aim of this work was to reveal …

Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine

ZV Magbanua, S Ozkan, BD Bartlett, P Chouvarine… - PLoS …, 2011 - journals.plos.org
Loblolly pine (LP; Pinus taeda L.) is the most economically important tree in the US and a
cornerstone species in southeastern forests. However, genomics research on LP and other …

Construction and characterization of two BAC libraries representing a deep-coverage of the genome of chicory (Cichorium intybus L., Asteraceae)

L Gonthier, A Bellec, C Blassiau, E Prat… - BMC Research …, 2010 - Springer
Abstract Background The Asteraceae represents an important plant family with respect to the
numbers of species present in the wild and used by man. Nonetheless, genomic resources …

Bioinformatics and expressional analysis of cDNA clones from floral buds

ME Pawełkowicz, A Skarzyńska… - … , Industry, and High …, 2017 - spiedigitallibrary.org
The application of genomic approaches may serve as an initial step in understanding the
complexity of biochemical network and cellular processes responsible for regulation and …

[PDF][PDF] Pyrosequencing/Sanger plant genome assembly (limitations, problems and solutions)-on the way to cucumber (Cucumis sativus L. cv. Borszczagowski) draft …

R Woycicki, Z Przybecki - Nature Precedings, 2010 - nature.com
Genome sequencing give us an opportunity to broaden the range and improve the quality of
omics studies. New sequencing technologies make it possible to achieve the sequencing …

Análise comparativa de regiões microssintênicas entre Passiflora edulis e as Malpighiales Populus trichocarpa e Manihot esculenta

E Reátegui, A del Carmen - 2019 - teses.usp.br
A família Passifloraceae pertence à ordem Malpighiales com~ 700 espécies e 16 gêneros.
O gênero Passiflora, compreende a espécie comercial Passiflora edulis (2n= 18), o …

The construction of genomic libraries in BAC and its practical application and bioinformatic usage

A Skarzyńska, K Yagi, M Kiełek… - … , Industry, and High …, 2018 - spiedigitallibrary.org
Libraries constructed in bacterial artificial chromosome (BAC) vectors are essential in
modern genomics for all organisms such as plants, animals, insects, algae and microbes …

Application of bioinformatics techniques for protein interaction analysis

J Grzędzicka, A Skarzyńska, K Posyniak… - … , Industry, and High …, 2018 - spiedigitallibrary.org
Proper protein annotation at both structural and functional level is very important challenge.
Herein we present the advantages and disadvantages of different bioinformatics programs …