The divided bacterial genome: structure, function, and evolution

GC Dicenzo, TM Finan - Microbiology and Molecular Biology …, 2017 - Am Soc Microbiol
Approximately 10% of bacterial genomes are split between two or more large DNA
fragments, a genome architecture referred to as a multipartite genome. This multipartite …

Adaptive genetic traits in pelagic freshwater microbes

MC Chiriac, M Haber… - Environmental …, 2023 - Wiley Online Library
Pelagic microbes have adopted distinct strategies to inhabit the pelagial of lakes and
oceans and can be broadly categorized in two groups: free‐living, specialized oligotrophs …

Insights into the phylogeny and coding potential of microbial dark matter

C Rinke, P Schwientek, A Sczyrba, NN Ivanova… - Nature, 2013 - nature.com
Genome sequencing enhances our understanding of the biological world by providing
blueprints for the evolutionary and functional diversity that shapes the biosphere. However …

Shifting the genomic gold standard for the prokaryotic species definition

M Richter, R Rosselló-Móra - Proceedings of the National …, 2009 - National Acad Sciences
DNA-DNA hybridization (DDH) has been used for nearly 50 years as the gold standard for
prokaryotic species circumscriptions at the genomic level. It has been the only taxonomic …

Ecological and evolutionary significance of genomic GC content diversity in monocots

P Šmarda, P Bureš, L Horová… - Proceedings of the …, 2014 - National Acad Sciences
Genomic DNA base composition (GC content) is predicted to significantly affect genome
functioning and species ecology. Although several hypotheses have been put forward to …

Community-wide analysis of microbial genome sequence signatures

GJ Dick, AF Andersson, BJ Baker, SL Simmons… - Genome biology, 2009 - Springer
Background Analyses of DNA sequences from cultivated microorganisms have revealed
genome-wide, taxa-specific nucleotide compositional characteristics, referred to as genome …

The genus Serratia revisited by genomics

DJ Williams, PAD Grimont, A Cazares… - Nature …, 2022 - nature.com
The genus Serratia has been studied for over a century and includes clinically-important and
diverse environmental members. Despite this, there is a paucity of genomic information …

Evidence of selection upon genomic GC-content in bacteria

F Hildebrand, A Meyer, A Eyre-Walker - PLoS genetics, 2010 - journals.plos.org
The genomic GC-content of bacteria varies dramatically, from less than 20% to more than
70%. This variation is generally ascribed to differences in the pattern of mutation between …

Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles

R Stepanauskas, EA Fergusson, J Brown… - Nature …, 2017 - nature.com
Microbial single-cell genomics can be used to provide insights into the metabolic potential,
interactions, and evolution of uncultured microorganisms. Here we present WGA-X, a …

How to get more out of molecular fingerprints: practical tools for microbial ecology

M Marzorati, L Wittebolle, N Boon… - Environmental …, 2008 - Wiley Online Library
Community‐level molecular techniques are widely used in comparative microbial ecology to
assess the diversity of microbial communities and their response to changing environments …