Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Functional trait‐based approaches as a common framework for aquatic ecologists

S Martini, F Larras, A Boyé, E Faure… - Limnology and …, 2021 - Wiley Online Library
Aquatic ecologists face challenges in identifying the general rules of the functioning of
ecosystems. A common framework, including freshwater, marine, benthic, and pelagic …

Navigating the integration of biotic interactions in biogeography

W Thuiller, I Calderón‐Sanou… - Journal of …, 2024 - Wiley Online Library
Biotic interactions are widely recognised as the backbone of ecological communities, but
how best to study them is a subject of intense debate, especially at macro‐ecological scales …

Metabarcoding from microbes to mammals: comprehensive bioassessment on a global scale

ZG Compson, B McClenaghan, GAC Singer… - Frontiers in Ecology …, 2020 - frontiersin.org
Global biodiversity loss is unprecedented, and threats to existing biodiversity are growing.
Given pervasive global change, a major challenge facing resource managers is a lack of …

Studying ecosystems with DNA metabarcoding: lessons from biomonitoring of aquatic macroinvertebrates

A Bush, ZG Compson, WA Monk, TM Porter… - Frontiers in Ecology …, 2019 - frontiersin.org
An ongoing challenge for ecological studies has been the collection of data with high
precision and accuracy at a suitable scale to detect and manage critical global change …

TaxoNERD: deep neural models for the recognition of taxonomic entities in the ecological and evolutionary literature

N Le Guillarme, W Thuiller - Methods in Ecology and Evolution, 2022 - Wiley Online Library
Easy access to multi‐taxa information (eg distribution, traits, diet) in the scientific literature is
essential to understand, map and predict all‐inclusive biodiversity. Tools are needed to …

Toward sustainable environmental quality: priority research questions for Asia

KMY Leung, KWY Yeung, J You, K Choi… - Environmental …, 2020 - Wiley Online Library
Environmental and human health challenges are pronounced in Asia, an exceptionally
diverse and complex region where influences of global megatrends are extensive and …

DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness

A Bush, WA Monk, ZG Compson… - Proceedings of the …, 2020 - National Acad Sciences
The complexity and natural variability of ecosystems present a challenge for reliable
detection of change due to anthropogenic influences. This issue is exacerbated by …

Environmental DNA shaping a new era of ecotoxicological research

X Zhang - Environmental Science & Technology, 2019 - ACS Publications
Aquatic ecosystems, such as rivers and lakes, are exposed to multiple stressors from
anthropogenic activity and changes in climate, which have resulted in a general decrease in …

Fine‐tuning biodiversity assessments: A framework to pair eDNA metabarcoding and morphological approaches

CL Pereira, MTP Gilbert, MB Araújo… - Methods in Ecology …, 2021 - Wiley Online Library
Accurate quantification of biodiversity can be demanding and expensive. Although
environmental DNA (eDNA) metabarcoding can facilitate biodiversity assessments through …