Ribosome Biogenesis and the Translation Process in Escherichia coli

M Kaczanowska, M Rydén-Aulin - Microbiology and Molecular …, 2007 - Am Soc Microbiol
Translation, the decoding of mRNA into protein, is the third and final element of the central
dogma. The ribosome, a nucleoprotein particle, is responsible and essential for this process …

Molecular simulations of protein dynamics: new windows on mechanisms in biology

GG Dodson, DP Lane, CS Verma - EMBO reports, 2008 - embopress.org
Recent advances in computer hardware and software have led to the development of
increasingly successful molecular simulations of protein structural dynamics that are intrinsic …

Undesired usage and the robust self-assembly of heterogeneous structures

A Murugan, J Zou, MP Brenner - Nature communications, 2015 - nature.com
Inspired by multiprotein complexes in biology and recent successes in synthetic DNA tile
and colloidal self-assembly, we study the spontaneous assembly of structures made of many …

Intragenomic 16S rDNA Divergence in Haloarcula marismortui Is an Adaptation to Different Temperatures

A López-López, S Benlloch, M Bonfá… - Journal of molecular …, 2007 - Springer
The halophilic archaeon Haloarcula marismortui contains three ribosomal RNA operons,
designated rrnA, rrnB, and rrnC. Operons A and C are virtually identical, whereas operon B …

[HTML][HTML] Experimental and computational determination of tRNA dynamics

RW Alexander, J Eargle, Z Luthey-Schulten - FEBS letters, 2010 - Elsevier
As the molecular representation of the genetic code, tRNA plays a central role in the
translational machinery where it interacts with several proteins and other RNAs during the …

Cleavage product accumulation decreases the activity of cutinase during PET hydrolysis

C Groß, K Hamacher, K Schmitz… - Journal of Chemical …, 2017 - ACS Publications
The Fusarium solani cutinase (Fs C) is a promising candidate for the enzymatic degradation
of the synthetic polyester polyethylene terephthalate (PET) but still suffers from a lack of …

Mechanical transduction of cytoplasmic-to-transmembrane-domain movements in a hyperpolarization-activated cyclic nucleotide–gated cation channel

C Gross, A Saponaro, B Santoro, A Moroni… - Journal of Biological …, 2018 - ASBMB
Hyperpolarization-activated cyclic nucleotide–gated cation (HCN) channels play a critical
role in the control of pacemaking in the heart and repetitive firing in neurons. In HCN …

Coarse-grained models to study dynamics of nanoscale biomolecules and their applications to the ribosome

J Trylska - Journal of Physics: Condensed Matter, 2010 - iopscience.iop.org
Biopolymers are of dynamic nature and undergo functional motions spanning a large
spectrum of timescales. To study the internal dynamics of nano-sized molecular complexes …

Deep spatiotemporal transcriptome analysis provides new insights into early development of koi carp (Cyprinus carpio var. koi)

M Luo, X Shi, J Guo, K Lin, W Zhu, J Fu, L Wang… - Aquaculture, 2023 - Elsevier
Koi carp, a colorful variety of the common carp (Cyprinus carpio), is a rich genetic resource
for studies on skin color differentiation and pigmentation, as well as for breeding and …

Dynamic transcriptome sequencing and analysis during early development in the bighead carp (Hypophthalmichthys nobilis)

J Fu, W Zhu, L Wang, M Luo, F Song, Z Dong - BMC genomics, 2019 - Springer
Background Early development is a key process of the life history of fish. However, the
relationship between the transcriptome and the dynamic regulation of early development is …