Rapid prediction and analysis of protein intrinsic disorder

GW Dayhoff, VN Uversky - Protein Science, 2022 - Wiley Online Library
Protein intrinsic disorder is found in all kingdoms of life and is known to underpin numerous
physiological and pathological processes. Computational methods play an important role in …

Experimental validation of IoT image encryption scheme based on a 5-D fractional hyperchaotic system and Numba JIT compiler

D Clemente-López, JM Munoz-Pacheco… - Internet of Things, 2024 - Elsevier
In the realm of Internet of Things (IoT) systems, the interconnectivity of physical hardware
devices is a fundamental aspect, and as a result, data exchange assumes a critical role in …

Bringing UMAP closer to the speed of light with GPU acceleration

CJ Nolet, V Lafargue, E Raff, T Nanditale… - Proceedings of the …, 2021 - ojs.aaai.org
Abstract The Uniform Manifold Approximation and Projection (UMAP) algorithm has become
widely popular for its ease of use, quality of results, and support for exploratory …

Evaluating performance and portability of high-level programming models: Julia, Python/Numba, and Kokkos on exascale nodes

WF Godoy, P Valero-Lara, TE Dettling… - 2023 IEEE …, 2023 - ieeexplore.ieee.org
We explore the performance and portability of the high-level programming models: the
LLVM-based Julia and Python/Numba, and Kokkos on high-performance computing (HPC) …

Adaptation of FPGA architecture for accelerated image preprocessing

O Barkovska, I Filippenko, I Semenenko… - … and Computer Systems, 2023 - nti.khai.edu
The work is devoted to the topical problem at the intersection of communications theory,
digital electronics and numerical analysis, namely the study of image processing methods …

A gpu-accelerated particle advection methodology for 3D Lagrangian coherent structures in high-speed turbulent boundary layers

C Lagares, G Araya - Energies, 2023 - mdpi.com
In this work, we introduce a scalable and efficient GPU-accelerated methodology for
volumetric particle advection and finite-time Lyapunov exponent (FTLE) calculation, focusing …

Exploring Numba and CuPy for GPU-Accelerated Monte Carlo Radiation Transport

T Askar, A Yergaliyev, B Shukirgaliyev, E Abdikamalov - Computation, 2024 - mdpi.com
This paper examines the performance of two popular GPU programming platforms, Numba
and CuPy, for Monte Carlo radiation transport calculations. We conducted tests involving …

PyAdMesh: A novel high-performance software for adaptive finite element analysis

SA Gharebaghi, AH Khatami - Simulation Modelling Practice and Theory, 2025 - Elsevier
This study introduces PyAdMesh, an open-source software for reducing discretization errors
in finite element analysis using an h-adaptive method. Adaptive approaches iteratively refine …

Nas parallel benchmark kernels with python: A performance and programming effort analysis focusing on gpus

D Di Domenico, GGH Cavalheiro… - 2022 30th Euromicro …, 2022 - ieeexplore.ieee.org
GPU devices are currently seen as one of the trending topics for parallel computing.
Commonly, GPU applications are developed with programming tools based on compiled …

A novel GPU-based approach for embedded NARMAX/FROLS system identification

MM Soudré, HVH Ayala, AC Melo, CH Llanos - Mechanical Systems and …, 2024 - Elsevier
Identifying system dynamics is an essential task for several research areas that deal with
real systems intended for purposes such as control, monitoring, or fault detection. However …