Microbiomes in light of traits: a phylogenetic perspective

JBH Martiny, SE Jones, JT Lennon, AC Martiny - Science, 2015 - science.org
BACKGROUND Microbial communities—microbiomes—are intricately linked to human
health and critical ecosystem services. New technologies allow the rapid characterization of …

Beyond biogeographic patterns: processes shaping the microbial landscape

CA Hanson, JA Fuhrman, MC Horner-Devine… - Nature Reviews …, 2012 - nature.com
Recently, microbiologists have established the existence of biogeographic patterns among a
wide range of microorganisms. The focus of the field is now shifting to identifying the …

Emergent simplicity in microbial community assembly

JE Goldford, N Lu, D Bajić, S Estrela, M Tikhonov… - Science, 2018 - science.org
A major unresolved question in microbiome research is whether the complex taxonomic
architectures observed in surveys of natural communities can be explained and predicted by …

High taxonomic variability despite stable functional structure across microbial communities

S Louca, SMS Jacques, APF Pires, JS Leal… - Nature ecology & …, 2016 - nature.com
Understanding the processes that are driving variation of natural microbial communities
across space or time is a major challenge for ecologists. Environmental conditions strongly …

Prochlorococcus: the structure and function of collective diversity

SJ Biller, PM Berube, D Lindell… - Nature Reviews …, 2015 - nature.com
The marine cyanobacterium Prochlorococcus is the smallest and most abundant
photosynthetic organism on Earth. In this Review, we summarize our understanding of the …

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

J Wang, JI Shen, Y Wu, C Tu, J Soininen… - The ISME …, 2013 - academic.oup.com
Increasing evidence has emerged for non-random spatial distributions of microbes, but
knowledge of the processes that cause variation in microbial assemblage among …

Drivers of bacterial β-diversity depend on spatial scale

JBH Martiny, JA Eisen, K Penn… - Proceedings of the …, 2011 - National Acad Sciences
The factors driving β-diversity (variation in community composition) yield insights into the
maintenance of biodiversity on the planet. Here we tested whether the mechanisms that …

Broadscale ecological patterns are robust to use of exact sequence variants versus operational taxonomic units

SI Glassman, JBH Martiny - MSphere, 2018 - Am Soc Microbiol
Recent discussion focuses on the best method for delineating microbial taxa, based on
either exact sequence variants (ESVs) or traditional operational taxonomic units (OTUs) of …

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

J Wiedenbeck, FM Cohan - FEMS microbiology reviews, 2011 - academic.oup.com
Horizontal genetic transfer (HGT) has played an important role in bacterial evolution at least
since the origins of the bacterial divisions, and HGT still facilitates the origins of bacterial …

Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems

L Zinger, LA Amaral-Zettler, JA Fuhrman… - PloS one, 2011 - journals.plos.org
Background Marine microbial communities have been essential contributors to global
biomass, nutrient cycling, and biodiversity since the early history of Earth, but so far their …