OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem
AM Altenhoff, A Warwick Vesztrocy… - Nucleic Acids …, 2024 - academic.oup.com
In this update paper, we present the latest developments in the OMA browser
knowledgebase, which aims to provide high-quality orthology inferences and facilitate the …
knowledgebase, which aims to provide high-quality orthology inferences and facilitate the …
CLOCI: unveiling cryptic fungal gene clusters with generalized detection
Gene clusters are genomic loci that contain multiple genes that are functionally and
genetically linked. Gene clusters collectively encode diverse functions, including small …
genetically linked. Gene clusters collectively encode diverse functions, including small …
Noncontiguous operon atlas for the Staphylococcus aureus genome
P Iturbe, AS Martín, H Hamamoto, M Marcet-Houben… - …, 2024 - academic.oup.com
Bacteria synchronize the expression of genes with related functions by organizing genes
into operons so that they are cotranscribed together in a single polycistronic messenger …
into operons so that they are cotranscribed together in a single polycistronic messenger …
EdgeHOG: fine-grained ancestral gene order inference at tree-of-life scale
C Bernard, Y Nevers, NBR Karampudi, KJ Gilbert… - bioRxiv, 2024 - biorxiv.org
Ancestral genomes are essential for studying the diversification of life from the last universal
common ancestor to modern organisms. Methods have been proposed to infer ancestral …
common ancestor to modern organisms. Methods have been proposed to infer ancestral …
CLOCI: Unveiling cryptic gene clusters with generalized detection
Gene clusters are genomic loci that contain multiple genes that are functionally and
genetically linked. Gene clusters collectively encode diverse functions, including small …
genetically linked. Gene clusters collectively encode diverse functions, including small …
[PDF][PDF] A Systematic Literature Review of Comparative Visualization Designs and Techniques for Comparative Genomics Analysis
Visual analytics are vital in helping people understand and make sense of the data.
Visualizing genome sequencing data is especially important to comparative genomics …
Visualizing genome sequencing data is especially important to comparative genomics …
[引用][C] Noncontiguous operon atlas for the Staphylococcus aureus genome
P Iturbe Sanz, Á San Martín Bernal… - microLife, 5, 2024 …, 2024 - Oxford University Press
[引用][C] Computational Resources for Molecular Biology 2023
DH Mathews, R Casadio… - Journal of molecular …, 2023 - pubmed.ncbi.nlm.nih.gov
Computational Resources for Molecular Biology 2023 Computational Resources for
Molecular Biology 2023 J Mol Biol. 2023 Jul 15;435(14):168160. doi: 10.1016/j.jmb.2023.168160 …
Molecular Biology 2023 J Mol Biol. 2023 Jul 15;435(14):168160. doi: 10.1016/j.jmb.2023.168160 …