Frequent aneuploidy in primary human T cells after CRISPR–Cas9 cleavage

AD Nahmad, E Reuveni, E Goldschmidt, T Tenne… - Nature …, 2022 - nature.com
Multiple clinical trials of allogeneic T cell therapy use site-specific nucleases to disrupt T cell
receptor (TCR) and other genes,,,,–. In this study, using single-cell RNA sequencing, we …

[HTML][HTML] Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders

D Porubsky, W Höps, H Ashraf, PH Hsieh… - Cell, 2022 - cell.com
Unlike copy number variants (CNVs), inversions remain an underexplored genetic variation
class. By integrating multiple genomic technologies, we discover 729 inversions in 41 …

Genomic architecture and functional effects of potential human inversion supergenes

E Campoy, M Puig, I Yakymenko… - … of the Royal …, 2022 - royalsocietypublishing.org
Supergenes are involved in adaptation in multiple organisms, but they are little known in
humans. Genomic inversions are the most common mechanism of supergene generation …

A survey of current methods to detect and genotype inversions

VCT Hanlon, PM Lansdorp, V Guryev - Human Mutation, 2022 - Wiley Online Library
Polymorphic inversions are ubiquitous in humans and they have been linked to both
adaptation and disease. Following their discovery in Drosophila more than a century ago …

Detailed stratified GWAS analysis for severe COVID-19 in four European populations

F Degenhardt, D Ellinghaus, S Juzenas… - Human molecular …, 2022 - academic.oup.com
Given the highly variable clinical phenotype of Coronavirus disease 2019 (COVID-19), a
deeper analysis of the host genetic contribution to severe COVID-19 is important to improve …

Inversion polymorphism in a complete human genome assembly

D Porubsky, WT Harvey, AN Rozanski, J Ebler, W Höps… - Genome Biology, 2023 - Springer
The telomere-to-telomere (T2T) complete human reference has significantly improved our
ability to characterize genome structural variation. To understand its impact on inversion …

The early-life exposome modulates the effect of polymorphic inversions on DNA methylation

N Carreras-Gallo, A Cáceres, L Balagué-Dobón… - Communications …, 2022 - nature.com
Polymorphic genomic inversions are chromosomal variants with intrinsic variability that play
important roles in evolution, environmental adaptation, and complex traits. We investigated …

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

FAM Maggiolini, AD Sanders, CJ Shew… - Genome …, 2020 - genome.cshlp.org
Rhesus macaque is an Old World monkey that shared a common ancestor with human∼ 25
Myr ago and is an important animal model for human disease studies. A deep …

Correction of a Factor VIII genomic inversion with designer-recombinases

F Lansing, L Mukhametzyanova… - Nature …, 2022 - nature.com
Despite advances in nuclease-based genome editing technologies, correcting human
disease-causing genomic inversions remains a challenge. Here, we describe the potential …

Genomic structural variation: A complex but important driver of human evolution

DC Soto, JM Uribe‐Salazar, CJ Shew… - American Journal of …, 2023 - Wiley Online Library
Structural variants (SVs)—including duplications, deletions, and inversions of DNA—can
have significant genomic and functional impacts but are technically difficult to identify and …