The importance of genomic variation for biodiversity, ecosystems and people

M Stange, RDH Barrett, AP Hendry - Nature Reviews Genetics, 2021 - nature.com
Abstract The 2019 United Nations Global assessment report on biodiversity and ecosystem
services estimated that approximately 1 million species are at risk of extinction. This …

[PDF][PDF] Going beyond SNPs: The role of structural genomic variants in adaptive evolution and species diversification.

M Wellenreuther, C Mérot, E Berdan… - Molecular ecology, 2019 - bio.ulaval.ca
Although single‐nucleotide polymorphism (SNPs) were initially thought to make‐up the
majority of selectable variation (Morin, Luikart, & Wayne, 2004; Sachidanandam et al …

Copy number variants outperform SNPs to reveal genotype–temperature association in a marine species

Y Dorant, H Cayuela, K Wellband, M Laporte… - Molecular …, 2020 - Wiley Online Library
Copy number variants (CNVs) are a major component of genotypic and phenotypic variation
in genomes. To date, our knowledge of genotypic variation and evolution has largely been …

Coping with environmental constraints: Geographically divergent adaptive evolution and germination plasticity in the transcontinental Populus tremuloides

R Goessen, N Isabel, C Wehenkel, N Pavy… - Plants, People …, 2022 - Wiley Online Library
Societal Impact Statement Syntheses clearly show that global warming is affecting
ecosystems and biodiversity around the world. New methods and measures are needed to …

Functional and morphological evolution in gymnosperms: a portrait of implicated gene families

AR De La Torre, A Piot, B Liu, B Wilhite… - Evolutionary …, 2020 - Wiley Online Library
Gymnosperms diverged from their sister plant clade of flowering plants 300 Mya.
Morphological and functional divergence between the two major seed plant clades involved …

A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: 'rCNV', a versatile r package for paralogue and CNV …

P Karunarathne, Q Zhou, K Schliep… - Molecular Ecology …, 2023 - Wiley Online Library
Recent studies have highlighted the significant role of copy number variants (CNVs) in
phenotypic diversity, environmental adaptation and species divergence across eukaryotes …

A second unveiling: Haplotig masking of the eastern oyster genome improves population‐level inference

JB Puritz, X Guo, M Hare, Y He… - Molecular Ecology …, 2024 - Wiley Online Library
Genome assembly can be challenging for species that are characterized by high amounts of
polymorphism, heterozygosity, and large effective population sizes. High levels of …

Genome-wide detection of copy number variations and their association with distinct phenotypes in the world's sheep

H Salehian-Dehkordi, YX Xu, SS Xu, X Li, LY Luo… - Frontiers in …, 2021 - frontiersin.org
Copy number variations (CNVs) are a major source of structural variation in mammalian
genomes. Here, we characterized the genome-wide CNV in 2059 sheep from 67 …

[HTML][HTML] Editing Metabolism, Sex, and Microbiome: How Can We Help Poplar Resist Pathogens?

MA Kovalev, NS Gladysh, AS Bogdanova… - International Journal of …, 2024 - mdpi.com
Poplar (Populus) is a genus of woody plants of great economic value. Due to the growing
economic importance of poplar, there is a need to ensure its stable growth by increasing its …

A comprehensive genomic scan reveals gene dosage balance impacts on quantitative traits in Populus trees

H Bastiaanse, M Zinkgraf, C Canning… - Proceedings of the …, 2019 - National Acad Sciences
Gene dosage variation and the associated changes in gene expression influence a wide
variety of traits, ranging from cancer in humans to yield in plants. It is also expected to affect …