[HTML][HTML] The role of regulatory variation in complex traits and disease

FW Albert, L Kruglyak - Nature Reviews Genetics, 2015 - nature.com
We are in a phase of unprecedented progress in identifying genetic loci that cause variation
in traits ranging from growth and fitness in simple organisms to disease in humans …

From 'differential expression'to 'differential networking'–identification of dysfunctional regulatory networks in diseases

A de la Fuente - Trends in genetics, 2010 - cell.com
Understanding diseases requires identifying the differences between healthy and affected
tissues. Gene expression data have revolutionized the study of diseases by making it …

[HTML][HTML] Emergence of a high-plasticity cell state during lung cancer evolution

ND Marjanovic, M Hofree, JE Chan, D Canner, K Wu… - Cancer cell, 2020 - cell.com
Tumor evolution from a single cell into a malignant, heterogeneous tissue remains poorly
understood. Here, we profile single-cell transcriptomes of genetically engineered mouse …

[HTML][HTML] Comparative analysis of proteome and transcriptome variation in mouse

A Ghazalpour, B Bennett, VA Petyuk, L Orozco… - PLoS …, 2011 - journals.plos.org
The relationships between the levels of transcripts and the levels of the proteins they encode
have not been examined comprehensively in mammals, although previous work in plants …

Efficient control of population structure in model organism association mapping

HM Kang, NA Zaitlen, CM Wade, A Kirby… - Genetics, 2008 - academic.oup.com
Genomewide association mapping in model organisms such as inbred mouse strains is a
promising approach for the identification of risk factors related to human diseases. However …

Relative impact of nucleotide and copy number variation on gene expression phenotypes

BE Stranger, MS Forrest, M Dunning, CE Ingle… - Science, 2007 - science.org
Extensive studies are currently being performed to associate disease susceptibility with one
form of genetic variation, namely, single-nucleotide polymorphisms (SNPs). In recent years …

Genetics of gene expression and its effect on disease

V Emilsson, G Thorleifsson, B Zhang, AS Leonardson… - Nature, 2008 - nature.com
Common human diseases result from the interplay of many genes and environmental
factors. Therefore, a more integrative biology approach is needed to unravel the complexity …

Genomics-assisted breeding for crop improvement

RK Varshney, A Graner, ME Sorrells - Trends in plant science, 2005 - cell.com
Genomics research is generating new tools, such as functional molecular markers and
informatics, as well as new knowledge about statistics and inheritance phenomena that …

Variations in DNA elucidate molecular networks that cause disease

Y Chen, J Zhu, PY Lum, X Yang, S Pinto, DJ MacNeil… - Nature, 2008 - nature.com
Identifying variations in DNA that increase susceptibility to disease is one of the primary
aims of genetic studies using a forward genetics approach. However, identification of …

Genetics of global gene expression

MV Rockman, L Kruglyak - Nature Reviews Genetics, 2006 - nature.com
A new field of genetic analysis of global gene expression has emerged in recent years,
driven by the realization that traditional techniques of linkage and association analysis can …