Phylogeography's past, present, and future: 10 years after

MJ Hickerson, BC Carstens, J Cavender-Bares… - Molecular phylogenetics …, 2010 - Elsevier
Approximately 20 years ago, Avise and colleagues proposed the integration of
phylogenetics and population genetics for investigating the connection between micro-and …

The importance of phase information for human genomics

R Tewhey, V Bansal, A Torkamani, EJ Topol… - Nature Reviews …, 2011 - nature.com
Contemporary sequencing studies often ignore the diploid nature of the human genome
because they do not routinely separate or'phase'maternally and paternally derived …

Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool'CubeX'

TR Gaunt, S Rodríguez, INM Day - BMC bioinformatics, 2007 - Springer
Background The frequency of a haplotype comprising one allele at each of two loci can be
expressed as a cubic equation (the'Hill equation'), the solution of which gives that frequency …

Fetal genomic analysis from a maternal biological sample

YMD Lo, KC Chan, WKR Chiu, C Cantor - US Patent 8,467,976, 2013 - Google Patents
2012-05-03 Assigned to THE CHINESE UNIVERSITY OF HONG KONG reassignment THE
CHINESE UNIVERSITY OF HONG KONG ASSIGNMENT OF ASSIGNORS INTEREST (SEE …

A comparison of phasing algorithms for trios and unrelated individuals

J Marchini, D Cutler, N Patterson, M Stephens… - The American Journal of …, 2006 - cell.com
Knowledge of haplotype phase is valuable for many analysis methods in the study of
disease, population, and evolutionary genetics. Considerable research effort has been …

Transformation-associated recombination (TAR) cloning for genomics studies and synthetic biology

N Kouprina, V Larionov - Chromosoma, 2016 - Springer
Transformation-associated recombination (TAR) cloning represents a unique tool for
isolation and manipulation of large DNA molecules. The technique exploits a high level of …

A new JAVA interface implementation of THESIAS: testing haplotype effects in association studies

DA Tregouet, V Garelle - Bioinformatics, 2007 - academic.oup.com
THESIAS (Testing Haplotype EffectS In Association Studies) is a popular software for
carrying haplotype association analysis in unrelated individuals. In addition to the command …

Accommodating linkage disequilibrium in genetic-association analyses via ridge regression

N Malo, O Libiger, NJ Schork - The American Journal of Human Genetics, 2008 - cell.com
Large-scale genetic-association studies that take advantage of an extremely dense set of
genetic markers have begun to produce very compelling statistical associations between …

Haplotype‐association analysis

N Liu, K Zhang, H Zhao - Advances in genetics, 2008 - Elsevier
Association methods based on linkage disequilibrium (LD) offer a promising approach for
detecting genetic variations that are responsible for complex human diseases. Although …

TAR cloning: insights into gene function, long-range haplotypes and genome structure and evolution

N Kouprina, V Larionov - Nature Reviews Genetics, 2006 - nature.com
The structural and functional analysis of mammalian genomes would benefit from the ability
to isolate from multiple DNA samples any targeted chromosomal segment that is the size of …