A review of approaches to identifying patient phenotype cohorts using electronic health records

C Shivade, P Raghavan… - Journal of the …, 2014 - academic.oup.com
Objective To summarize literature describing approaches aimed at automatically identifying
patients with a common phenotype. Materials and methods We performed a review of …

Natural language processing in oncology: a review

W Yim, M Yetisgen, WP Harris, SW Kwan - JAMA oncology, 2016 - jamanetwork.com
Importance Natural language processing (NLP) has the potential to accelerate translation of
cancer treatments from the laboratory to the clinic and will be a powerful tool in the era of …

Model-assisted cohort selection with bias analysis for generating large-scale cohorts from the EHR for oncology research

B Birnbaum, N Nussbaum, K Seidl-Rathkopf… - arXiv preprint arXiv …, 2020 - arxiv.org
Objective Electronic health records (EHRs) are a promising source of data for health
outcomes research in oncology. A challenge in using EHR data is that selecting cohorts of …

Big data in IBD: big progress for clinical practice

NSS Tabib, M Madgwick, P Sudhakar, B Verstockt… - Gut, 2020 - gut.bmj.com
IBD is a complex multifactorial inflammatory disease of the gut driven by extrinsic and
intrinsic factors, including host genetics, the immune system, environmental factors and the …

Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach

WH Weng, KB Wagholikar, AT McCray… - BMC medical informatics …, 2017 - Springer
Background The medical subdomain of a clinical note, such as cardiology or neurology, is
useful content-derived metadata for developing machine learning downstream applications …

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions

WW Chapman, PM Nadkarni… - Journal of the …, 2011 - academic.oup.com
This issue of JAMIA focuses on natural language processing (NLP) techniques for clinical-
text information extraction. Several articles are offshoots of the yearly 'Informatics for …

[HTML][HTML] Text mining of cancer-related information: review of current status and future directions

I Spasić, J Livsey, JA Keane, G Nenadić - International journal of medical …, 2014 - Elsevier
Purpose This paper reviews the research literature on text mining (TM) with the aim to find
out (1) which cancer domains have been the subject of TM efforts,(2) which knowledge …

Comorbidities associated with vitiligo: a ten-year retrospective study

VM Sheth, Y Guo, AA Qureshi - Dermatology, 2014 - karger.com
Background: Vitiligo is a common disorder of depigmentation that has been associated with
other autoimmune diseases. No recent large-scale data exist on the rates of comorbidities …

Implementation of evidence-based psychotherapies for posttraumatic stress disorder in VA specialty clinics

BV Watts, B Shiner, L Zubkoff… - Psychiatric …, 2014 - Am Psychiatric Assoc
Objective The US Department of Veterans Affairs (VA) has engaged in substantial efforts to
promote the use of evidence-based psychotherapies for posttraumatic stress disorder …

Measuring use of evidence based psychotherapy for posttraumatic stress disorder

B Shiner, LW D'Avolio, TM Nguyen, MH Zayed… - … and Policy in Mental …, 2013 - Springer
To improve methods of estimating use of evidence-based psychotherapy for posttraumatic
stress disorder in the Veteran's health administration, we evaluated administrative data and …