The era of the ARG: An introduction to ancestral recombination graphs and their significance in empirical evolutionary genomics
In the presence of recombination, the evolutionary relationships between a set of sampled
genomes cannot be described by a single genealogical tree. Instead, the genomes are …
genomes cannot be described by a single genealogical tree. Instead, the genomes are …
A general and efficient representation of ancestral recombination graphs
As a result of recombination, adjacent nucleotides can have different paths of genetic
inheritance and therefore the genealogical trees for a sample of DNA sequences vary along …
inheritance and therefore the genealogical trees for a sample of DNA sequences vary along …
Biases in ARG-based inference of historical population size in populations experiencing selection
Inferring the demographic history of populations provides fundamental insights into species
dynamics and is essential for developing a null model to accurately study selective …
dynamics and is essential for developing a null model to accurately study selective …
Inference and applications of ancestral recombination graphs
Ancestral recombination graphs (ARGs) summarize the complex genealogical relationships
between individuals represented in a sample of DNA sequences. Their use is currently …
between individuals represented in a sample of DNA sequences. Their use is currently …
Divergence and gene flow history at two large chromosomal inversions underlying ecotype differentiation in the long‐snouted seahorse
Chromosomal inversions can play an important role in divergence and reproductive
isolation by building and maintaining distinct allelic combinations between evolutionary …
isolation by building and maintaining distinct allelic combinations between evolutionary …
[HTML][HTML] The era of the ARG: an empiricist's guide to ancestral recombination graphs
In the presence of recombination, the evolutionary relationships between a set of sampled
genomes cannot be described by a single genealogical tree. Instead, the genomes are …
genomes cannot be described by a single genealogical tree. Instead, the genomes are …
[HTML][HTML] Estimating evolutionary and demographic parameters via ARG-derived IBD
Inference of demographic and evolutionary parameters from a sample of genome
sequences often proceeds by first inferring identical-by-descent (IBD) genome segments. By …
sequences often proceeds by first inferring identical-by-descent (IBD) genome segments. By …