De novo assembly of genomes for which there is no reference, is essential for novel species
discovery and metagenomics. In this work, we accelerate two key performance bottlenecks …

De novo genome assembly is a fundamental problem in the field of bioinformatics, that aims
to assemble the DNA sequence of an unknown genome from numerous short DNA …

Genome assembly is the computational process of merging short parts of DNA into larger
sequences called contigs. Rapid growth of high-throughput genome sequencing …

Assembling large-scale genomes from massive number of high-throughput sequencing
reads is a major problem in Computational Genomics. Distributed sequence assemblers …

De novo genome assembly reconstructs the chromosomes from massive relatively short
fragmented reads and serves as fundamental for studying new species where there is no …

In this paper, we propose and evaluate CUDA-Parttree, a parallel strategy that executes the
first phase of the MAFFT Parttree Multiple Sequence Alignment tool (distance matrix …

The process of short read generation for de novo Genome Assembly results in a loss of
information about the position each read originates from in the source genome. State-of-the …