Building pan-genome infrastructures for crop plants and their use in association genetics

M Jayakodi, M Schreiber, N Stein, M Mascher - DNA Research, 2021 - academic.oup.com
Pan-genomic studies aim at representing the entire sequence diversity within a species to
provide useful resources for evolutionary studies, functional genomics and breeding of …

Promises and challenges of crop translational genomics

M Mascher, M Jayakodi, H Shim, N Stein - Nature, 2024 - nature.com
Crop translational genomics applies breeding techniques based on genomic datasets to
improve crops. Technological breakthroughs in the past ten years have made it possible to …

Genebank genomics highlights the diversity of a global barley collection

SG Milner, M Jost, S Taketa, ER Mazón… - Nature …, 2019 - nature.com
Genebanks hold comprehensive collections of cultivars, landraces and crop wild relatives of
all major food crops, but their detailed characterization has so far been limited to sparse core …

Genetic diversity and population structure of advanced clones selected over forty years by a potato breeding program in the USA

J Pandey, DC Scheuring, JW Koym, J Coombs… - Scientific Reports, 2021 - nature.com
Abstract Knowledge regarding genetic diversity and population structure of breeding
materials is essential for crop improvement. The Texas A&M University Potato Breeding …

CropGS-Hub: a comprehensive database of genotype and phenotype resources for genomic prediction in major crops

J Chen, C Tan, M Zhu, C Zhang, Z Wang… - Nucleic Acids …, 2024 - academic.oup.com
The explosive amount of multi-omics data has brought a paradigm shift both in academic
research and further application in life science. However, managing and reusing the …

Genetic diversity and core collection extraction of Robinia pseudoacacia L. germplasm resources based on phenotype, physiology, and genotyping markers

Q Guo, J Liu, J Li, S Cao, Z Zhang, J Zhang… - Industrial Crops and …, 2022 - Elsevier
Robinia pseudoacacia L.(black locust) is a multipurpose tree species for conservation
ecology, feeding and forestry industry in China. In the present study, 13 phenotypic, 3 …

Phenotypic Characterization, Genetic Diversity Assessment in 6,778 Accessions of Barley (Hordeum vulgare L. ssp. vulgare) Germplasm Conserved in National …

V Kaur, J Aravind, Manju, SR Jacob, J Kumari… - Frontiers in plant …, 2022 - frontiersin.org
The entire collection of cultivated barley germplasm accessions conserved in the Indian
National Genebank (INGB) was characterized for nine qualitative and 8 quantitative traits to …

Are cereal grasses a single genetic system?

M Mascher, MP Marone, M Schreiber, N Stein - Nature Plants, 2024 - nature.com
In 1993, a passionate and provocative call to arms urged cereal researchers to consider the
taxon they study as a single genetic system and collaborate with each other. Since then, that …

A single NLR gene confers resistance to leaf and stripe rust in wheat

D Sharma, R Avni, J Gutierrez-Gonzalez… - Nature …, 2024 - nature.com
Nucleotide-binding leucine-rich repeat (NLR) disease resistance genes typically confer
resistance against races of a single pathogen. Here, we report that Yr87/Lr85, an NLR gene …

Comparison between core set selection methods using different Illumina marker platforms: A case study of assessment of diversity in wheat

B Soleimani, H Lehnert, J Keilwagen… - Frontiers in Plant …, 2020 - frontiersin.org
Collections of plant genetic resources stored in genebanks are an important source of
genetic diversity for improvement in plant breeding programs and for conservation of natural …