General theory for multiple input-output perturbations in complex molecular systems. 1. Linear QSPR electronegativity models in physical, organic, and medicinal …

H Gonzalez-Diaz, S Arrasate… - Current topics in …, 2013 - ingentaconnect.com
In general perturbation methods starts with a known exact solution of a problem and add
“small” variation terms in order to approach to a solution for a related problem without known …

Review of MARCH-INSIDE & complex networks prediction of drugs: ADMET, anti-parasite activity, metabolizing enzymes and cardiotoxicity proteome biomarkers

H Gonzalez-Diaz, A Duardo-Sanchez… - Current Drug …, 2010 - benthamdirect.com
In this communication we carry out an in-depth review of a very versatile QSPR-like method.
The method name is MARCH-INSIDE (MARkov CHains Ivariants for Network Selection and …

QSAR as a random event: modeling of nanoparticles uptake in PaCa2 cancer cells

AA Toropov, AP Toropova, T Puzyn, E Benfenati, G Gini… - Chemosphere, 2013 - Elsevier
Quantitative structure–property/activity relationships (QSPRs/QSARs) are a tool to predict
various endpoints for various substances. The “classic” QSPR/QSAR analysis is based on …

Unified QSAR approach to antimicrobials. Part 3: first multi-tasking QSAR model for input-coded prediction, structural back-projection, and complex networks …

FJ Prado-Prado, H González-Díaz… - Bioorganic & medicinal …, 2008 - Elsevier
Several pathogen parasite species show different susceptibilities to different antiparasite
drugs. Unfortunately, almost all structure-based methods are one-task or one-target …

Multi-target spectral moment QSAR versus ANN for antiparasitic drugs against different parasite species

FJ Prado-Prado, X García-Mera… - Bioorganic & medicinal …, 2010 - Elsevier
There are many of pathogen parasite species with different susceptibility profile to
antiparasitic drugs. Unfortunately, almost QSAR models predict the biological activity of …

Development of a multicompartment permeability‐limited lung PBPK model and its application in predicting pulmonary pharmacokinetics of antituberculosis drugs

L Gaohua, J Wedagedera, BG Small… - CPT …, 2015 - Wiley Online Library
Achieving sufficient concentrations of antituberculosis (TB) drugs in pulmonary tissue at the
optimum time is still a challenge in developing therapeutic regimens for TB. A …

QuBiLS-MAS, open source multi-platform software for atom- and bond-based topological (2D) and chiral (2.5D) algebraic molecular descriptors computations

JR Valdés-Martiní, Y Marrero-Ponce… - Journal of …, 2017 - Springer
Abstract Background In previous reports, Marrero-Ponce et al. proposed algebraic
formalisms for characterizing topological (2D) and chiral (2.5 D) molecular features through …

Unified QSAR approach to antimicrobials. 4. Multi-target QSAR modeling and comparative multi-distance study of the giant components of antiviral drug–drug complex …

FJ Prado-Prado, OM de la Vega, E Uriarte… - Bioorganic & medicinal …, 2009 - Elsevier
One limitation of almost all antiviral Quantitative Structure–Activity Relationships (QSAR)
models is that they predict the biological activity of drugs against only one species of virus …

QuBiLS‐MIDAS: A parallel free‐software for molecular descriptors computation based on multilinear algebraic maps

CR García‐Jacas, Y Marrero‐Ponce… - 2014 - Wiley Online Library
The present report introduces the QuBiLS‐MIDAS software belonging to the ToMoCoMD‐
CARDD suite for the calculation of three‐dimensional molecular descriptors (MDs) based on …

HP-Lattice QSAR for dynein proteins: experimental proteomics (2D-electrophoresis, mass spectrometry) and theoretic study of a Leishmania infantum sequence

MA Dea-Ayuela, Y Pérez-Castillo… - Bioorganic & medicinal …, 2008 - Elsevier
The toxicity and inefficacy of actual organic drugs against Leishmaniosis justify research
projects to find new molecular targets in Leishmania species including Leishmania infantum …