Ecological plant epigenetics: Evidence from model and non‐model species, and the way forward

CL Richards, C Alonso, C Becker, O Bossdorf… - Ecology …, 2017 - Wiley Online Library
Growing evidence shows that epigenetic mechanisms contribute to complex traits, with
implications across many fields of biology. In plant ecology, recent studies have attempted to …

Epigenetic variation and environmental change

P Meyer - Journal of Experimental Botany, 2015 - academic.oup.com
Environmental conditions can change the activity of plant genes via epigenetic effects that
alter the competence of genetic information to be expressed. This may provide a powerful …

The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants

AJ Bewick, CE Niederhuth, L Ji, NA Rohr, PT Griffin… - Genome biology, 2017 - Springer
Background The evolution of gene body methylation (gbM), its origins, and its functional
consequences are poorly understood. By pairing the largest collection of transcriptomes (> …

Melatonin may increase disease resistance and flavonoid biosynthesis through effects on DNA methylation and gene expression in grape berries

S Gao, W Ma, X Lyu, X Cao, Y Yao - BMC plant biology, 2020 - Springer
Background Melatonin can regulate plant growth, development and biotic responses by
causing global changes in gene expression; however, the melatonin-induced changes in …

Establishment, maintenance, and biological roles of non-CG methylation in plants

SK Kenchanmane Raju, EJ Ritter… - Essays in …, 2019 - portlandpress.com
Cytosine DNA methylation is prevalent throughout eukaryotes and prokaryotes. While most
commonly thought of as being localized to dinucleotide CpG sites, non-CG sites can also be …

RdDM-independent de novo and heterochromatin DNA methylation by plant CMT and DNMT3 orthologs

R Yaari, A Katz, K Domb, KD Harris, A Zemach… - Nature …, 2019 - nature.com
To properly regulate the genome, cytosine methylation is established by animal DNA
methyltransferase 3 s (DNMT3s). While altered DNMT3 homologs, Domains rearranged …

The epigenetic origin of life history transitions in plants and algae

J Vigneau, M Borg - Plant Reproduction, 2021 - Springer
Plants and algae have a complex life history that transitions between distinct life forms called
the sporophyte and the gametophyte. This phenomenon—called the alternation of …

DNA methylation mutants in Physcomitrella patens elucidate individual roles of CG and non-CG methylation in genome regulation

K Domb, A Katz, KD Harris, R Yaari… - Proceedings of the …, 2020 - National Acad Sciences
Cytosine (DNA) methylation in plants regulates the expression of genes and transposons.
While methylation in plant genomes occurs at CG, CHG, and CHH sequence contexts, the …

A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha

SI Diop, O Subotic, A Giraldo‐Fonseca… - The Plant …, 2020 - Wiley Online Library
Marchantia polymorpha has recently become a prime model for cellular, evo‐devo, synthetic
biological, and evolutionary investigations. We present a pseudomolecule‐scale assembly …

Genome-wide identification and comparative analysis of cytosine-5 DNA methyltransferase and demethylase families in wild and cultivated peanut

P Wang, C Gao, X Bian, S Zhao, C Zhao… - Frontiers in Plant …, 2016 - frontiersin.org
DNA methylation plays important roles in genome protection, regulation of gene expression
and is associated with plants development. Plant DNA methylation pattern was mediated by …