Genenames. org: the HGNC resources in 2023

RL Seal, B Braschi, K Gray, TEM Jones… - Nucleic Acids …, 2023 - academic.oup.com
Abstract The HUGO Gene Nomenclature Committee (HGNC) assigns unique symbols and
names to human genes. The HGNC database (www. genenames. org) currently contains …

Early Alzheimer's disease pathology in human cortex involves transient cell states

V Gazestani, T Kamath, NM Nadaf, A Dougalis… - Cell, 2023 - cell.com
Cellular perturbations underlying Alzheimer's disease (AD) are primarily studied in human
postmortem samples and model organisms. Here, we generated a single-nucleus atlas from …

[HTML][HTML] Intratumoral CD8+ T cells with a tissue-resident memory phenotype mediate local immunity and immune checkpoint responses in breast cancer

B Virassamy, F Caramia, P Savas, S Sant, J Wang… - Cancer Cell, 2023 - cell.com
CD8+ tumor-infiltrating lymphocytes with a tissue-resident memory T (T RM) cell phenotype
are associated with favorable prognosis in patients with triple-negative breast cancer …

Bayesian estimation of gene constraint from an evolutionary model with gene features

T Zeng, JP Spence, H Mostafavi, JK Pritchard - Nature Genetics, 2024 - nature.com
Measures of selective constraint on genes have been used for many applications, including
clinical interpretation of rare coding variants, disease gene discovery and studies of genome …

Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data

Y Zhao, H Cai, Z Zhang, J Tang, Y Li - Nature communications, 2021 - nature.com
The advent of single-cell RNA sequencing (scRNA-seq) technologies has revolutionized
transcriptomic studies. However, large-scale integrative analysis of scRNA-seq data remains …

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

Human Alzheimer's disease reactive astrocytes exhibit a loss of homeostastic gene expression

DL Dai, M Li, EB Lee - Acta Neuropathologica Communications, 2023 - Springer
Astrocytes are one of the brain's major cell types and are responsible for maintaining
neuronal homeostasis via regulating the extracellular environment, providing metabolic …

Mitochondrial ATP generation is more proteome efficient than glycolysis

Y Shen, HV Dinh, ER Cruz, Z Chen… - Nature chemical …, 2024 - nature.com
Metabolic efficiency profoundly influences organismal fitness. Nonphotosynthetic organisms,
from yeast to mammals, derive usable energy primarily through glycolysis and respiration …

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

TE Putman, K Schaper, N Matentzoglu… - Nucleic acids …, 2024 - academic.oup.com
Bridging the gap between genetic variations, environmental determinants, and phenotypic
outcomes is critical for supporting clinical diagnosis and understanding mechanisms of …

The gut virome is associated with stress-induced changes in behaviour and immune responses in mice

NL Ritz, LA Draper, TFS Bastiaanssen… - Nature …, 2024 - nature.com
The microbiota–gut–brain axis has been shown to play an important role in the stress
response, but previous work has focused primarily on the role of the bacteriome. The gut …