The multilayer nature of ecological networks

S Pilosof, MA Porter, M Pascual, S Kéfi - Nature Ecology & Evolution, 2017 - nature.com
Although networks provide a powerful approach to study a large variety of ecological
systems, their formulation does not typically account for multiple interaction types …

Modeling heterogeneity in random graphs through latent space models: a selective review

C Matias, S Robin - ESAIM: Proceedings and Surveys, 2014 - esaim-proc.org
Modeling heterogeneity in random graphs through latent space models: a selective review\*
Page 1 ESAIM: PROCEEDINGS AND SURVEYS, December 2014, Vol. 47, p. 55-74 F …

How structured is the entangled bank? The surprisingly simple organization of multiplex ecological networks leads to increased persistence and resilience

S Kéfi, V Miele, EA Wieters, SA Navarrete… - PLoS biology, 2016 - journals.plos.org
Species are linked to each other by a myriad of positive and negative interactions. This
complex spectrum of interactions constitutes a network of links that mediates ecological …

ClustGeo: an R package for hierarchical clustering with spatial constraints

M Chavent, V Kuentz-Simonet, A Labenne… - Computational …, 2018 - Springer
In this paper, we propose a Ward-like hierarchical clustering algorithm including
spatial/geographical constraints. Two dissimilarity matrices D_0 D 0 and D_1 D 1 are …

Describe, understand and predict

T Poisot, DB Stouffer, S Kéfi - Functional Ecology, 2016 - JSTOR
Networks are collections of nodes that are connected to each other by links. Innumerable
objects around us can be seen as networks, for example, the Internet (where nodes are …

Tobler's law in a multivariate world

L Anselin, X Li - Geographical Analysis, 2020 - Wiley Online Library
Tobler's first law of geography is widely recognized as reflecting broad empirical realities in
geography. Its key concepts of “near” and “related” are intuitive in a univariate setting …

Nine quick tips for analyzing network data

V Miele, C Matias, S Robin, S Dray - PLOS Computational Biology, 2019 - journals.plos.org
From the molecular to the ecosystem level, a biological system can often be represented as
a set of entities that interact with each other. Recent advances in data acquisition technology …

Mapping Averaged Pairwise Information (MAPI): a new exploratory tool to uncover spatial structure

S Piry, MP Chapuis, B Gauffre, J Papaïx… - Methods in Ecology …, 2016 - Wiley Online Library
Visualisation of spatial networks based on pairwise metrics such as (dis) similarity
coefficients provides direct information on spatial organisation of biological systems …

k-Gaps: a novel technique for clustering incomplete climatological time series

L Carro-Calvo, F Jaume-Santero… - Theoretical and Applied …, 2021 - Springer
In this paper, we show a new clustering technique (k-gaps) aiming to generate a robust
regionalization using sparse climate datasets with incomplete information in space and time …

Constrained spectral clustering for regionalization: Exploring the trade-off between spatial contiguity and landscape homogeneity

S Yuan, PN Tan, KS Cheruvelil… - … Conference on Data …, 2015 - ieeexplore.ieee.org
A regionalization system delineates the geographical landscape into spatially contiguous,
homogeneous units for landscape ecology research and applications. In this study, we …