Natural product drug discovery in the artificial intelligence era

FI Saldívar-González, VD Aldas-Bulos… - Chemical …, 2022 - pubs.rsc.org
Natural products (NPs) are primarily recognized as privileged structures to interact with
protein drug targets. Their unique characteristics and structural diversity continue to marvel …

Machine learning applications for mass spectrometry-based metabolomics

UW Liebal, ANT Phan, M Sudhakar, K Raman… - Metabolites, 2020 - mdpi.com
The metabolome of an organism depends on environmental factors and intracellular
regulation and provides information about the physiological conditions. Metabolomics helps …

Retip: retention time prediction for compound annotation in untargeted metabolomics

P Bonini, T Kind, H Tsugawa, DK Barupal… - Analytical …, 2020 - ACS Publications
Unidentified peaks remain a major problem in untargeted metabolomics by LC-MS/MS.
Confidence in peak annotations increases by combining MS/MS matching and retention …

The METLIN small molecule dataset for machine learning-based retention time prediction

X Domingo-Almenara, C Guijas, E Billings… - Nature …, 2019 - nature.com
Abstract Machine learning has been extensively applied in small molecule analysis to
predict a wide range of molecular properties and processes including mass spectrometry …

Toward machine learning-enhanced high-throughput experimentation

NS Eyke, BA Koscher, KF Jensen - Trends in Chemistry, 2021 - cell.com
Recent literature suggests that the fields of machine learning (ML) and high-throughput
experimentation (HTE) have separately received considerable attention from chemists and …

Artificial intelligence in metabolomics: A current review

J Chi, J Shu, M Li, R Mudappathi, Y Jin, F Lewis… - TrAC Trends in …, 2024 - Elsevier
Metabolomics and artificial intelligence (AI) form a synergistic partnership. Metabolomics
generates large datasets comprising hundreds to thousands of metabolites with complex …

Prediction of liquid chromatographic retention time with graph neural networks to assist in small molecule identification

Q Yang, H Ji, H Lu, Z Zhang - Analytical Chemistry, 2021 - ACS Publications
The predicted liquid chromatographic retention times (RTs) of small molecules are not
accurate enough for wide adoption in structural identification. In this study, we used the …

Prediction of analyte retention time in liquid chromatography

PR Haddad, M Taraji, R Szücs - Analytical Chemistry, 2020 - ACS Publications
Scope and Layout of This Review. This review addresses the approaches used to predict
chromatographic retention time in a range of liquid chromatographic techniques, with a …

Current status of retention time prediction in metabolite identification

M Witting, S Böcker - Journal of Separation Science, 2020 - Wiley Online Library
Metabolite identification is a crucial step in nontargeted metabolomics, but also represents
one of its current bottlenecks. Accurate identifications are required for correct biological …

Emerging contaminants: a One Health perspective

F Wang, L Xiang, KSY Leung, M Elsner, Y Zhang… - The Innovation, 2024 - cell.com
Environmental pollution is escalating due to rapid global development that often prioritizes
human needs over planetary health. Despite global efforts to mitigate legacy pollutants, the …