The emerging complexity of the tRNA world: mammalian tRNAs beyond protein synthesis

P Schimmel - Nature reviews Molecular cell biology, 2018 - nature.com
The discovery of the genetic code and tRNAs as decoders of the code transformed life
science. However, after establishing the role of tRNAs in protein synthesis, the field moved …

Synonymous but not silent: the codon usage code for gene expression and protein folding

Y Liu, Q Yang, F Zhao - Annual review of biochemistry, 2021 - annualreviews.org
Codon usage bias, the preference for certain synonymous codons, is found in all genomes.
Although synonymous mutations were previously thought to be silent, a large body of …

Cells alter their tRNA abundance to selectively regulate protein synthesis during stress conditions

M Torrent, G Chalancon, NS De Groot, A Wuster… - Science …, 2018 - science.org
Decoding the information in mRNA during protein synthesis relies on tRNA adaptors, the
abundance of which can affect the decoding rate and translation efficiency. To determine …

GC content shapes mRNA storage and decay in human cells

M Courel, Y Clément, C Bossevain, D Foretek… - Elife, 2019 - elifesciences.org
mRNA translation and decay appear often intimately linked although the rules of this
interplay are poorly understood. In this study, we combined our recent P-body transcriptome …

Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates

A Riba, N Di Nanni, N Mittal, E Arhné… - Proceedings of the …, 2019 - National Acad Sciences
Although protein synthesis dynamics has been studied both with theoretical models and by
profiling ribosome footprints, the determinants of ribosome flux along open reading frames …

Regulation of mRNA translation in neurons—a matter of life and death

M Kapur, CE Monaghan, SL Ackerman - Neuron, 2017 - cell.com
Dynamic regulation of mRNA translation initiation and elongation is essential for the survival
and function of neural cells. Global reductions in translation initiation resulting from …

Selective gene expression maintains human tRNA anticodon pools during differentiation

L Gao, A Behrens, G Rodschinka, S Forcelloni… - Nature Cell …, 2024 - nature.com
Transfer RNAs are essential for translating genetic information into proteins. The human
genome contains hundreds of predicted tRNA genes, many in multiple copies. How their …

Codon usage bias in animals: disentangling the effects of natural selection, effective population size, and GC-biased gene conversion

N Galtier, C Roux, M Rousselle… - Molecular biology …, 2018 - academic.oup.com
Selection on codon usage bias is well documented in a number of microorganisms. Whether
codon usage is also generally shaped by natural selection in large organisms, despite their …

Codon usage and splicing jointly influence mRNA localization

C Mordstein, R Savisaar, RS Young, J Bazile… - Cell systems, 2020 - cell.com
In the human genome, most genes undergo splicing, and patterns of codon usage are
splicing dependent: guanine and cytosine (GC) content is the highest within single-exon …

CCT3-LINC00326 axis regulates hepatocarcinogenic lipid metabolism

JN Søndergaard, C Sommerauer, I Atanasoai, LC Hinte… - Gut, 2022 - gut.bmj.com
Objective To better comprehend transcriptional phenotypes of cancer cells, we globally
characterised RNA-binding proteins (RBPs) to identify altered RNAs, including long non …