Gene co-expression network reconstruction: a review on computational methods for inferring functional information from plant-based expression data

A Emamjomeh, E Saboori Robat, J Zahiri… - Plant biotechnology …, 2017 - Springer
Reconstruction of gene co-expression networks is a powerful tool for better understanding of
gene function, biological processes, and complex disease mechanisms. In essence, co …

[HTML][HTML] Pokeweed antiviral protein: Its cytotoxicity mechanism and applications in plant disease resistance

R Di, NE Tumer - Toxins, 2015 - mdpi.com
Pokeweed antiviral protein (PAP) is a 29 kDa type I ribosome inactivating protein (RIP)
found in pokeweed plants. Pokeweed produces different forms of PAP. This review focuses …

[HTML][HTML] Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus

R Ebrahimi Khaksefidi, S Mirlohi, F Khalaji… - Frontiers in plant …, 2015 - frontiersin.org
Biotic and abiotic stresses affect plant development and production through alternation of
the gene expression pattern. Gene expression itself is under the control of different …

[HTML][HTML] Thaumatin-like protein (TLP) genes in garlic (Allium sativum L.): Genome-wide identification, characterization, and expression in response to Fusarium …

OK Anisimova, EZ Kochieva, AV Shchennikova… - Plants, 2022 - mdpi.com
Plant antifungal proteins include the pathogenesis-related (PR)-5 family of fungi-and other
stress-responsive thaumatin-like proteins (TLPs). However, the information on the TLPs of …

[HTML][HTML] Unified Transcriptomic Signature of Arbuscular Mycorrhiza Colonization in Roots of Medicago truncatula by Integration of Machine Learning, Promoter …

M Mohammadi-Dehcheshmeh, A Niazi… - Frontiers in plant …, 2018 - frontiersin.org
Plant root symbiosis with Arbuscular mycorrhizal (AM) fungi improves uptake of water and
mineral nutrients, improving plant development under stressful conditions. Unraveling the …

Genetic variants in SIRT3 transcriptional regulatory region affect promoter activity and fat deposition in three cattle breeds

L Gui, J Hong, SHA Raza, L Zan - Molecular and cellular probes, 2017 - Elsevier
Abstract Sirtuin 3 (SIRT3) is a mitochondrial nicotinamide adenine dinucleotide (NAD)-
dependent deacetylase. It has crucial roles in regulating the respiratory chain, in adenosine …

Detection of polymorphisms in the promoter of bovine SIRT1 gene and their effects on intramuscular fat content in Chinese indigenous cattle

L Gui, SHA Raza, Y Sun, R Khan, I Ullah, Y Han - Gene, 2019 - Elsevier
Intramuscular fat content (IMF) is one of the most significant factors for meat quality affecting
tenderness, flavor, and juiciness of meat. For this reason, we aimed to investigate the …

In silico search and biological validation of microRNAs related to drought response in peach and almond

F Esmaeili, B Shiran, H Fallahi, N Mirakhorli… - Functional & integrative …, 2017 - Springer
Plant responses to drought stress are regulated at the transcriptional and post-
transcriptional levels through noncoding endogenous microRNAs. These microRNAs play …

Gene regulatory network in almond (Prunus dulcis Mill.) in response to frost stress

A Alisoltani, B Shiran, H Fallahi, E Ebrahimie - Tree Genetics & Genomes, 2015 - Springer
Regulatory networks govern the plant molecular responses against environmental stress.
The underpinning regulatory networks of almond (Prunus dulcis Mill.) in response to frost …

Genome-wide analysis of key salinity-tolerance transporter (HKT1;5) in wheat and wild wheat relatives (A and D genomes)

M Zamani Babgohari, A Niazi, AA Moghadam… - In Vitro Cellular & …, 2013 - Springer
Exclusion of sodium ions from cells is one of the key salinity tolerance mechanisms in plants.
The high-affinity cation transporter (HKT1; 5) is located in the plasma membrane of the …