Stochastic community assembly: does it matter in microbial ecology?

J Zhou, D Ning - Microbiology and molecular biology reviews, 2017 - Am Soc Microbiol
Understanding the mechanisms controlling community diversity, functions, succession, and
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …

Fundamentals of microbial community resistance and resilience

A Shade, H Peter, SD Allison, DL Baho… - Frontiers in …, 2012 - frontiersin.org
Microbial communities are at the heart of all ecosystems, and yet microbial community
behavior in disturbed environments remains difficult to measure and predict. Understanding …

[图书][B] Metacommunity ecology, volume 59

MA Leibold, JM Chase - 2018 - degruyter.com
Metacommunity ecology links smaller-scale processes that have been the provenance of
population and community ecology—such as birth-death processes, species interactions …

Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity

A Shade, SE Jones, JG Caporaso, J Handelsman… - MBio, 2014 - Am Soc Microbiol
Microbial communities typically contain many rare taxa that make up the majority of the
observed membership, yet the contribution of this microbial “rare biosphere” to community …

Patterns and causes of species richness: a general simulation model for macroecology

NJ Gotelli, MJ Anderson, HT Arita, A Chao… - Ecology …, 2009 - Wiley Online Library
Understanding the causes of spatial variation in species richness is a major research focus
of biogeography and macroecology. Gridded environmental data and species richness …

Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time

AE Magurran, SR Baillie, ST Buckland, JMP Dick… - Trends in ecology & …, 2010 - cell.com
The growing need for baseline data against which efforts to reduce the rate of biodiversity
loss can be judged highlights the importance of long-term datasets, some of which are as …

Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community

S Venkataram, HY Kuo, EFY Hom… - Nature Ecology & …, 2023 - nature.com
Species interactions drive evolution while evolution shapes these interactions. The resulting
eco-evolutionary dynamics and their repeatability depend on how adaptive mutations …

Temporal variability is a personalized feature of the human microbiome

GE Flores, JG Caporaso, JB Henley, JR Rideout… - Genome biology, 2014 - Springer
Background It is now apparent that the complex microbial communities found on and in the
human body vary across individuals. What has largely been missing from previous studies is …

A meta-analysis of changes in bacterial and archaeal communities with time

A Shade, J Gregory Caporaso, J Handelsman… - The ISME …, 2013 - academic.oup.com
Ecologists have long studied the temporal dynamics of plant and animal communities with
much less attention paid to the temporal dynamics exhibited by microbial communities. As a …

Phylogenetic analysis of community assembly and structure over space and time

BC Emerson, RG Gillespie - Trends in ecology & evolution, 2008 - cell.com
Evolutionary ecologists are increasingly combining phylogenetic data with distributional and
ecological data to assess how and why communities of species differ from random …