Theory of protein folding

JN Onuchic, PG Wolynes - Current opinion in structural biology, 2004 - Elsevier
Protein folding should be complex. Proteins organize themselves into specific three-
dimensional structures, through a myriad of conformational changes. The classical view of …

Principles and overview of sampling methods for modeling macromolecular structure and dynamics

T Maximova, R Moffatt, B Ma, R Nussinov… - PLoS computational …, 2016 - journals.plos.org
Investigation of macromolecular structure and dynamics is fundamental to understanding
how macromolecules carry out their functions in the cell. Significant advances have been …

[图书][B] Planning algorithms

SM LaValle - 2006 - books.google.com
Planning algorithms are impacting technical disciplines and industries around the world,
including robotics, computer-aided design, manufacturing, computer graphics, aerospace …

The bridge test for sampling narrow passages with probabilistic roadmap planners

D Hsu, T Jiang, J Reif, Z Sun - 2003 IEEE international …, 2003 - ieeexplore.ieee.org
Probabilistic roadmap (PRM) planners have been successful in path planning of robots with
many degrees of freedom, but narrow passages in a robot's configuration space create …

An immune algorithm for protein structure prediction on lattice models

V Cutello, G Nicosia, M Pavone… - IEEE transactions on …, 2007 - ieeexplore.ieee.org
We present an immune algorithm (IA) inspired by the clonal selection principle, which has
been designed for the protein structure prediction problem (PSP). The proposed IA employs …

Sampling-based roadmap of trees for parallel motion planning

E Plaku, KE Bekris, BY Chen, AM Ladd… - IEEE Transactions on …, 2005 - ieeexplore.ieee.org
This paper shows how to effectively combine a sampling-based method primarily designed
for multiple-query motion planning [probabilistic roadmap method (PRM)] with sampling …

Narrow passage sampling for probabilistic roadmap planning

Z Sun, D Hsu, T Jiang, H Kurniawati… - IEEE Transactions on …, 2005 - ieeexplore.ieee.org
Probabilistic roadmap (PRM) planners have been successful in path planning of robots with
many degrees of freedom, but sampling narrow passages in a robot's configuration space …

Motion planning algorithms for molecular simulations: A survey

I Al-Bluwi, T Siméon, J Cortés - Computer Science Review, 2012 - Elsevier
Motion planning is a fundamental problem in robotics that has motivated research since
more than three decades ago. A large variety of algorithms have been proposed to compute …

Robotics

D Halperin, LE Kavraki, K Solovey - Handbook of discrete and …, 2017 - taylorfrancis.com
Robotics is concerned with the generation of computer-controlled motions of physical
objects in a wide variety of settings. Because physical objects define spatial distributions in 3 …

A path planning approach for computing large-amplitude motions of flexible molecules

J Cortés, T Siméon, V Ruiz de Angulo, D Guieysse… - 2005 - digital.csic.es
Motivation: Motion is inherent in molecular interactions. Molecular flexibility must be taken
into account in order to develop accurate computational techniques for predicting …