Visual workflows for 13 C-metabolic flux analysis

K Nöh, P Droste, W Wiechert - Bioinformatics, 2015 - academic.oup.com
Motivation: The precise quantification of intracellular metabolic flow rates is of fundamental
importance in bio (techno) logy and medical research. The gold standard in the field is …

A scientific workflow framework for 13C metabolic flux analysis

T Dalman, W Wiechert, K Nöh - Journal of biotechnology, 2016 - Elsevier
Metabolic flux analysis (MFA) with 13 C labeling data is a high-precision technique to
quantify intracellular reaction rates (fluxes). One of the major challenges of 13 C MFA is the …

Cloud MapReduce for Monte Carlo bootstrap applied to metabolic flux analysis

T Dalman, T Dörnemann, E Juhnke, M Weitzel… - Future Generation …, 2013 - Elsevier
The MapReduce architectural pattern popularized by Google has successfully been utilized
in several scientific applications. Up until now, MapReduce is rarely employed in the field of …

Core point detection using improved segmentation and orientation

MU Akram, A Tariq, S Nasir… - 2008 IEEE/ACS …, 2008 - ieeexplore.ieee.org
Core point detection is very important in fingerprint classification and matching process.
Usually fingerprint images have noisy background and the local orientation field also …

[PDF][PDF] Charakterisierung und Validierung der 13C-Stoffflussanalyse im Parallelansatz

S Miebach - 2012 - core.ac.uk
Metabolic fluxes (ie in vivo reaction rates) represent the properties of cellular regulation and
are most suitable for characterizing specific phenotypes of microorganisms. As intracellular …

An online provenance service for distributed metabolic flux analysis workflows

T Dalman, M Weitzel, W Wiechert… - 2011 IEEE Ninth …, 2011 - ieeexplore.ieee.org
Scientific applications in the area of Systems Biology become more and more demanding in
terms of workflow organization and required computational resources. Metabolic flux …

[HTML][HTML] Supporting quality of service in scientific workflows

T Dörnemann - 2013 - archiv.ub.uni-marburg.de
While workflow management systems have been utilized in enterprises to support
businesses for almost two decades, the use of workflows in scientific environments was fairly …

[PDF][PDF] A hybrid parallelization approach for cloud-enabled metabolic flux analysis simulation workflows

T Dalman, M Weitzel, B Freisleben, W Wiechert, K Nöh - 2011 - dl.gi.de
Abstract Amazonss Hadoop MapReduce service is aa viable solution for Cloud. enabled
scientific applications. In pre. vious work we showed that writing scalable simulation …

[HTML][HTML] Scientific Workflows for Metabolic Flux Analysis

T Dalman - 2017 - archiv.ub.uni-marburg.de
Metabolic engineering is a highly interdisciplinary research domain that interfaces biology,
mathematics, computer science, and engineering. Metabolic flux analysis with carbon tracer …

[HTML][HTML] Runtime Adaptation of Scientific Service Workflows

E Juhnke - 2014 - archiv.ub.uni-marburg.de
Software landscapes are rather subject to change than being complete after having been
built. Changes may be caused by a modified customer behavior, the shift to new hardware …