Increased interregional virus exchange and nucleotide diversity outline the expansion of chikungunya virus in Brazil

J Xavier, LCJ Alcantara, V Fonseca, M Lima… - Nature …, 2023 - nature.com
The emergence and reemergence of mosquito-borne diseases in Brazil such as yellow
fever, zika, chikungunya, and dengue have had serious impacts on public health. Concerns …

Nanopore sequencing technology and its applications

P Zheng, C Zhou, Y Ding, B Liu, L Lu, F Zhu… - MedComm, 2023 - Wiley Online Library
Since the development of Sanger sequencing in 1977, sequencing technology has played a
pivotal role in molecular biology research by enabling the interpretation of biological genetic …

Hardware acceleration of genomics data analysis: challenges and opportunities

T Robinson, J Harkin, P Shukla - Bioinformatics, 2021 - academic.oup.com
The significant decline in the cost of genome sequencing has dramatically changed the
typical bioinformatics pipeline for analysing sequencing data. Where traditionally, the …

Genomic characterization of SARS‐CoV‐2 isolates from patients in Turkey reveals the presence of novel mutations in spike and nsp12 proteins

E Sahin, G Bozdayi, S Yigit, H Muftah… - Journal of medical …, 2021 - Wiley Online Library
Novel mutations have been emerging in the genome of severe acute respiratory syndrome‐
coronavirus 2 (SARS‐CoV‐2); consequently, the evolving of more virulent and treatment …

Rapid genotyping of targeted viral samples using Illumina short-read sequencing data

A Váradi, E Kaszab, G Kardos, E Prépost, K Szarka… - Plos one, 2022 - journals.plos.org
The most important information about microorganisms might be their accurate genome
sequence. Using current Next Generation Sequencing methods, sequencing data can be …

[HTML][HTML] Spatiotemporal Dynamics of SARS-CoV-2 Variants During the First Year of the Pandemic Highlight the Earlier Emergence of the Zeta Variant of Interest in …

MM Moraes, GRF Campos, CA Banho, AF Versiani… - Pathogens, 2024 - mdpi.com
During the COVID-19 pandemic, SARS-CoV-2 caused an alarming number of cases and
deaths worldwide. Brazil was severely affected from late 2020 onward, especially after the …

[HTML][HTML] Increased interregional virus exchange and nucleotide diversity outline the expansion of the chikungunya virus ECSA lineage in Brazil

J Xavier, L Alcantara, V Fonseca, M Lima, E Castro… - medRxiv, 2023 - ncbi.nlm.nih.gov
The emergence and reemergence of mosquito-borne diseases in Brazil such as Yellow
Fever, Zika, Chikungunya, and Dengue have had serious impacts on public health …

Practical algorithms for Computational Phylogenetics

S Ciccolella - 2022 - boa.unimib.it
In this manuscript we described the main computational challenges of the cancer
phylogenetic field and we proposed different solutions for the three main problems of (i) the …

Alignment-Free Genotyping of Known Variations with MALVA

G Bernardini, L Denti, M Previtali - Variant Calling: Methods and Protocols, 2022 - Springer
The discovery and characterization of sequence variations in human populations are crucial
in genetic studies. Standard methods for addressing this problem are computationally …

Reportype: Ferramenta Bioinformática Flexível para Pesquisa de Locus e Genotipagem de Agentes Infeciosos

HI dos Santos Cruz - 2023 - search.proquest.com
Esta dissertação apresenta o desenvolvimento da ReporType, um pipeline flexível para a
pesquisa de locus e genotipagem de agentes infeciosos. Em resposta ao contexto …