A guide to carrying out a phylogenomic target sequence capture project
T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …
large portions of the genome. Instead of sequencing and annotating whole genomes, many …
Revisionary systematics of Octocorallia (Cnidaria: Anthozoa) guided by phylogenomics
CS McFadden, LP Van Ofwegen… - Bulletin of the Society of …, 2022 - bhacjournal.org
The anthozoan sub-class Octocorallia includes over 3500 nominal species of soft corals and
gorgonian sea fans, many of which serve as critical foundation species in benthic marine …
gorgonian sea fans, many of which serve as critical foundation species in benthic marine …
Understanding UCEs: a comprehensive primer on using ultraconserved elements for arthropod phylogenomics
Targeted enrichment of ultraconserved elements (UCEs) has emerged as a promising tool
for inferring evolutionary history in many taxa, with utility ranging from phylogenetic and …
for inferring evolutionary history in many taxa, with utility ranging from phylogenetic and …
A tenuis relationship: traditional taxonomy obscures systematics and biogeography of the 'Acropora tenuis' (Scleractinia: Acroporidae) species complex
Molecular phylogenetics has fundamentally altered our understanding of the taxonomy,
systematics and biogeography of corals. Recently developed phylogenomic techniques …
systematics and biogeography of corals. Recently developed phylogenomic techniques …
Phylogenomics, origin, and diversification of Anthozoans (Phylum Cnidaria)
Anthozoan cnidarians (corals and sea anemones) include some of the world's most
important foundation species, capable of building massive reef complexes that support …
important foundation species, capable of building massive reef complexes that support …
Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time
Identifying how past environmental conditions shaped the evolution of corals and their
skeletal traits provides a framework for predicting their persistence and that of their non …
skeletal traits provides a framework for predicting their persistence and that of their non …
Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits
Abstract Background The phylogeny of Cnidaria has been a source of debate for decades,
during which nearly all-possible relationships among the major lineages have been …
during which nearly all-possible relationships among the major lineages have been …
[HTML][HTML] Combining transcriptomes and ultraconserved elements to illuminate the phylogeny of Apidae
Two increasingly popular approaches to reconstruct the Tree of Life involve whole
transcriptome sequencing and the target capture of ultraconserved elements (UCEs). Both …
transcriptome sequencing and the target capture of ultraconserved elements (UCEs). Both …
Sequence capture phylogenomics of historical ethanol‐preserved museum specimens: Unlocking the rest of the vault
S Derkarabetian, LR Benavides… - Molecular ecology …, 2019 - Wiley Online Library
Natural history collections play a crucial role in biodiversity research, and museum
specimens are increasingly being incorporated into modern genetics‐based studies …
specimens are increasingly being incorporated into modern genetics‐based studies …
An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives
Targeted enrichment of genomic DNA can profoundly increase the phylogenetic resolution
of clades and inform taxonomy. Here, we redesign a custom bait set previously developed …
of clades and inform taxonomy. Here, we redesign a custom bait set previously developed …