Non-immunoglobulin scaffolds: a focus on their targets

K Škrlec, B Štrukelj, A Berlec - Trends in biotechnology, 2015 - cell.com
Non-immunoglobulin (non-Ig) scaffolds are, in contrast to antibodies, small single-domain
proteins that require no post-translational modification, often lack disulfide bonds, and can …

Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants

R Yin, BY Feng, A Varshney, BG Pierce - Protein Science, 2022 - Wiley Online Library
High‐resolution experimental structural determination of protein–protein interactions has led
to valuable mechanistic insights, yet due to the massive number of interactions and …

Novel advances in the design of three-dimensional bio-scaffolds to control cell fate: translation from 2D to 3D

E Santos, RM Hernández, JL Pedraz, G Orive - Trends in biotechnology, 2012 - cell.com
Recreating the most critical aspects of the native extracellular matrix (ECM) is fundamental
to understand and control the processes regulating cell fate and cell function. From the ill …

Exploring the repeat protein universe through computational protein design

TJ Brunette, F Parmeggiani, PS Huang, G Bhabha… - Nature, 2015 - nature.com
A central question in protein evolution is the extent to which naturally occurring proteins
sample the space of folded structures accessible to the polypeptide chain. Repeat proteins …

SYNBIP: synthetic binding proteins for research, diagnosis and therapy

X Wang, F Li, W Qiu, B Xu, Y Li, X Lian… - Nucleic acids …, 2022 - academic.oup.com
The success of protein engineering and design has extensively expanded the protein space,
which presents a promising strategy for creating next-generation proteins of diverse …

Adhiron: a stable and versatile peptide display scaffold for molecular recognition applications

C Tiede, AAS Tang, SE Deacon… - … , Design & Selection, 2014 - academic.oup.com
We have designed a novel non-antibody scaffold protein, termed Adhiron, based on a
phytocystatin consensus sequence. The Adhiron scaffold shows high thermal stability (T m …

Engineered proteins with desired specificity: DARPins, other alternative scaffolds and bispecific IgGs

C Jost, A Plückthun - Current opinion in structural biology, 2014 - Elsevier
Highlights•Scaffold libraries have now combined concave and convex paratopes.•Scaffold
proteins have shown new uses from sensors to viral retargeting.•Bispecific IgG molecules …

Evolution of alternative adaptive immune systems in vertebrates

T Boehm, M Hirano, SJ Holland, S Das… - Annual review of …, 2018 - annualreviews.org
Adaptive immunity in jawless fishes is based on antigen recognition by three types of
variable lymphocyte receptors (VLRs) composed of variable leucine-rich repeats, which are …

Alternative affinity ligands for immunoglobulins

N Kruljec, T Bratkovič - Bioconjugate Chemistry, 2017 - ACS Publications
The demand for recombinant therapeutic antibodies and Fc-fusion proteins is expected to
increase in the years to come. Hence, extensive efforts are concentrated on improving the …

Beyond antibody engineering: directed evolution of alternative binding scaffolds and enzymes using yeast surface display

D Könning, H Kolmar - Microbial Cell Factories, 2018 - Springer
Pioneered exactly 20 years ago, yeast surface display (YSD) continues to take a major role
in protein engineering among the high-throughput display methodologies that have been …