Catalysis and Electron Transfer in De Novo Designed Metalloproteins

KJ Koebke, TBJ Pinter, WC Pitts, VL Pecoraro - Chemical reviews, 2022 - ACS Publications
One of the hallmark advances in our understanding of metalloprotein function is showcased
in our ability to design new, non-native, catalytically active protein scaffolds. This review …

De novo design and structural characterization of proteins and metalloproteins

WF DeGrado, CM Summa, V Pavone… - Annual review of …, 1999 - annualreviews.org
▪ Abstract De novo protein design has recently emerged as an attractive approach for
studying the structure and function of proteins. This approach critically tests our …

Structural chemistry of peptides containing backbone expanded amino acid residues: conformational features of β, γ, and hybrid peptides

PG Vasudev, S Chatterjee, N Shamala… - Chemical …, 2011 - ACS Publications
The remarkable complexity of globular protein structures was first revealed about half a
century ago, when the crystal structure of myoglobin was determined at 2.4 Å. 1 In the …

Control over overall shape and size in de novo designed proteins

YR Lin, N Koga, R Tatsumi-Koga… - Proceedings of the …, 2015 - National Acad Sciences
We recently described general principles for designing ideal protein structures stabilized by
completely consistent local and nonlocal interactions. The principles relate secondary …

Prediction of tight turns and their types in proteins

KC Chou - Analytical biochemistry, 2000 - Elsevier
A tight turn in protein structure is defined as a site where (i) a polypeptide chain reverses its
overall direction, ie, leads the chain to fold back on itself by nearly 180°, and (ii) the amino …

Vibrational spectroscopic detection of beta-and gamma-turns in synthetic and natural peptides and proteins

E Vass, M Hollósi, F Besson, R Buchet - Chemical reviews, 2003 - ACS Publications
The final goal of functional genomics is to determine the biological role for all of the genes in
a cell. At present, the genome-scale prediction of protein function is based primarily on the …

Illuminating the dark conformational space of macrocycles using dominant rotors

DB Diaz, SD Appavoo, AF Bogdanchikova… - Nature …, 2021 - nature.com
Three-dimensional conformation is the primary determinant of molecular properties. The
thermal energy available at room temperature typically equilibrates the accessible …

Neutral peptides in the gas phase: conformation and aggregation issues

E Gloaguen, M Mons, K Schwing… - Chemical Reviews, 2020 - ACS Publications
Combined IR and UV laser spectroscopic techniques in molecular beams merged with
theoretical approaches have proven to be an ideal tool to elucidate intrinsic structural …

[HTML][HTML] Extension of the classical classification of β-turns

AG de Brevern - Scientific reports, 2016 - nature.com
The functional properties of a protein primarily depend on its three-dimensional (3D)
structure. These properties have classically been assigned, visualized and analysed on the …

Signal Transduction in Receptor for Advanced Glycation End Products (RAGE)

V Rai, AY Maldonado, DS Burz, S Reverdatto… - Journal of Biological …, 2012 - ASBMB
The receptor for advanced glycation end products (RAGE) is a multiligand cell surface
macromolecule that plays a central role in the etiology of diabetes complications …