Viruses and antiviral immunity in Drosophila

J Xu, S Cherry - Developmental & Comparative Immunology, 2014 - Elsevier
Viral pathogens present many challenges to organisms, driving the evolution of a myriad of
antiviral strategies to combat infections. A wide variety of viruses infect invertebrates …

The regulation and functions of MAPK pathways in Drosophila

BZ Shilo - Methods, 2014 - Elsevier
Abstract The Mitogen-Activated Protein Kinase (MAPK) pathway represents one of the most
conserved signaling cascades in multicellular organisms, since its cytoplasmic components …

PANGEA: a new gene set enrichment tool for Drosophila and common research organisms

Y Hu, A Comjean, H Attrill, G Antonazzo… - Nucleic Acids …, 2023 - academic.oup.com
Gene set enrichment analysis (GSEA) plays an important role in large-scale data analysis,
helping scientists discover the underlying biological patterns over-represented in a gene list …

The Hippo signaling pathway interactome

Y Kwon, A Vinayagam, X Sun, N Dephoure, SP Gygi… - Science, 2013 - science.org
The Hippo pathway controls metazoan organ growth by regulating cell proliferation and
apoptosis. Many components have been identified, but our knowledge of the composition …

Let-7 expression is a significant determinant of response to chemotherapy through the regulation of IL-6/STAT3 pathway in esophageal squamous cell carcinoma

K Sugimura, H Miyata, K Tanaka, R Hamano… - Clinical cancer …, 2012 - AACR
Purpose: Cisplatin-based chemotherapy is widely used for esophageal cancer, sometimes
in combination with surgery/radiotherapy, but poor response to chemotherapy is not …

Integrating protein-protein interaction networks with phenotypes reveals signs of interactions

A Vinayagam, J Zirin, C Roesel, Y Hu, B Yilmazel… - Nature …, 2014 - nature.com
A major objective of systems biology is to organize molecular interactions as networks and
to characterize information flow within networks. We describe a computational framework to …

[HTML][HTML] A comprehensive Drosophila melanogaster transcription factor interactome

L Shokri, S Inukai, A Hafner, K Weinand, K Hens… - Cell reports, 2019 - cell.com
Combinatorial interactions among transcription factors (TFs) play essential roles in
generating gene expression specificity and diversity in metazoans. Using yeast 2-hybrid …

Functional characterization of a novel λ‐cyhalothrin metabolizing glutathione S‐transferase, CpGSTe3, from the codling moth Cydia pomonella

C Hu, W Wang, D Ju, GM Chen, XL Tan… - Pest management …, 2020 - Wiley Online Library
BACKGROUND Recent work has shown that two codling moth (Cydia pomonella)
glutathione S‐transferase genes (GSTs), CpGSTd1 and CpGSTd3, can metabolize λ …

[HTML][HTML] An integrative analysis of the InR/PI3K/Akt network identifies the dynamic response to insulin signaling

A Vinayagam, MM Kulkarni, R Sopko, X Sun, Y Hu… - Cell reports, 2016 - cell.com
Insulin regulates an essential conserved signaling pathway affecting growth, proliferation,
and metabolism. To expand our understanding of the insulin pathway, we combine …

Protein complex–based analysis framework for high-throughput data sets

A Vinayagam, Y Hu, M Kulkarni, C Roesel, R Sopko… - Science …, 2013 - science.org
Analysis of high-throughput data increasingly relies on pathway annotation and functional
information derived from Gene Ontology. This approach has limitations, in particular for the …