Fecal indicator bacteria from environmental sources; strategies for identification to improve water quality monitoring

ML Devane, E Moriarty, L Weaver, A Cookson, B Gilpin - Water Research, 2020 - Elsevier
In tropical to temperate environments, fecal indicator bacteria (FIB), such as enterococci and
Escherichia coli, can persist and potentially multiply, far removed from their natural reservoir …

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

J Wiedenbeck, FM Cohan - FEMS microbiology reviews, 2011 - academic.oup.com
Horizontal genetic transfer (HGT) has played an important role in bacterial evolution at least
since the origins of the bacterial divisions, and HGT still facilitates the origins of bacterial …

Phylogenetic background and habitat drive the genetic diversification of Escherichia coli

M Touchon, A Perrin, JAM De Sousa, B Vangchhia… - PLoS …, 2020 - journals.plos.org
Escherichia coli is mostly a commensal of birds and mammals, including humans, where it
can act as an opportunistic pathogen. It is also found in water and sediments. We …

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

M Touchon, C Hoede, O Tenaillon, V Barbe… - PLoS …, 2009 - journals.plos.org
The Escherichia coli species represents one of the best-studied model organisms, but also
encompasses a variety of commensal and pathogenic strains that diversify by high rates of …

Escherichia coli in the environment: implications for water quality and human health

S Ishii, MJ Sadowsky - Microbes and environments, 2008 - jstage.jst.go.jp
Escherichia coli is naturally present in the intestinal tracts of warm-blooded animals. Since
E. coli is released into the environment through deposition of fecal material, this bacterium is …

A comparison of homologous recombination rates in bacteria and archaea

M Vos, X Didelot - The ISME journal, 2009 - academic.oup.com
It is a standard practice to test for the signature of homologous recombination in studies
examining the genetic diversity of bacterial populations. Although it has emerged that …

Potential impact of antimicrobial resistance in wildlife, environment and human health

H Radhouani, N Silva, P Poeta, C Torres… - Frontiers in …, 2014 - frontiersin.org
Given the significant spatial and temporal heterogeneity in antimicrobial resistance
distribution and the factors that affect its evolution, dissemination, and persistence, it is …

Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains

F Jaureguy, L Landraud, V Passet, L Diancourt… - BMC genomics, 2008 - Springer
Abstract Background Extraintestinal pathogenic Escherichia coli (ExPEC) strains represent a
huge public health burden. Knowledge of their clonal diversity and of the association of …

The evolution of the Escherichia coli phylogeny

RR Chaudhuri, IR Henderson - Infection, Genetics and Evolution, 2012 - Elsevier
Escherichia coli is familiar to biologists as a classical model system, ubiquitous in molecular
biology laboratories around the world. Outside of the laboratory, E. coli strains exist as an …

Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination

C Carlos, MM Pires, NC Stoppe, EM Hachich… - BMC microbiology, 2010 - Springer
Background Escherichia coli strains are commonly found in the gut microflora of warm-
blooded animals. These strains can be assigned to one of the four main phylogenetic …