Natural product discovery through microbial genome mining

E Kenshole, M Herisse, M Michael, SJ Pidot - Current Opinion in Chemical …, 2021 - Elsevier
The advent of the genomic era has opened up enormous possibilities for the discovery of
new natural products. Also known as specialized metabolites, these compounds produced …

Catalytic divergencies in the mechanism of L-arginine hydroxylating nonheme iron enzymes

HS Ali, SP de Visser - Frontiers in Chemistry, 2024 - frontiersin.org
Many enzymes in nature utilize a free arginine (L-Arg) amino acid to initiate the biosynthesis
of natural products. Examples include nitric oxide synthases, which generate NO from L-Arg …

Direct cloning strategies for large genomic fragments: A review

YN Chen, YZ Cui, XR Chen, JY Wang, BZ Li… - Biotechnology …, 2025 - Elsevier
Mining large-scale functional regions of the genome helps to understand the essence of
cellular life. The rapid accumulation of genomic information provides a wealth of material for …

Bioprospecting through cloning of whole natural product biosynthetic gene clusters

Z Lin, J Nielsen, Z Liu - Frontiers in bioengineering and …, 2020 - frontiersin.org
Since the discovery of penicillin, natural products and their derivatives have been a valuable
resource for drug discovery. With recent development of genome mining approaches in the …

Discovery and Biosynthesis of the Cytotoxic Polyene Terpenomycin in Human Pathogenic Nocardia

M Herisse, K Ishida, J Staiger-Creed, L Judd… - ACS Chemical …, 2023 - ACS Publications
Nocardia are opportunistic human pathogens that can cause a range of debilitating and
difficult to treat infections of the lungs, brain, skin, and soft tissues. Despite their close …

[HTML][HTML] Transformation-associated recombination (TAR) cloning and its applications for gene function; genome architecture and evolution; biotechnology and …

N Kouprina, V Larionov - Oncotarget, 2023 - ncbi.nlm.nih.gov
Transformation-associated recombination (TAR) cloning represents a unique tool to
selectively and efficiently recover a given chromosomal segment up to several hundred kb in …

Selective biosynthesis of a rhamnosyl nosiheptide by a novel bacterial rhamnosyltransferase

Y Du, Y Xia, L Wu, L Chen, J Rong, J Fan… - Microbial …, 2024 - Wiley Online Library
Nosiheptide (NOS) is a thiopeptide antibiotic produced by the bacterium Streptomyces
actuosus. The hydroxyl group of 3‐hydroxypyridine in NOS has been identified as a …

Improved De Novo Draft Genome Sequence of the Nocavionin-Producing Type Strain Nocardia terpenica IFM 0706 and Comparative Genomics with the Closely …

A Buchmann, H Gross - Microbiology Resource Announcements, 2020 - Am Soc Microbiol
We report an improved de novo draft genome sequence of the human-pathogenic strain
Nocardia terpenica IFM 0706T. The resequencing unveiled that the genome size is larger …

Mobilization of cryptic antibiotic biosynthesis loci from human-pathogenic Nocardia

M Herisse, SJ Pidot - Methods in Enzymology, 2022 - Elsevier
The cloning and heterologous expression of natural product biosynthetic gene clusters has
helped to identify many new bioactive molecules and conclusively connect genes to …

[PDF][PDF] Extradiol cleavage of L†DOPA as strategy for natural product biosynthesis

PA Jones, NM Johnson, KL Klugh, LW Peterson… - The FASEB …, 2022 - par.nsf.gov
ASBMB 2022 poster_Jones_for printing Page 1 Biosynthesis of VPCA requires a three-enzyme
mini-pathway. The heme-dependent L-tyrosine hydroxylase (ie LmbB2) is a peroxidase that …