[HTML][HTML] SpliceAI-visual: a free online tool to improve SpliceAI splicing variant interpretation

JM de Sainte Agathe, M Filser, B Isidor, T Besnard… - Human Genomics, 2023 - Springer
SpliceAI is an open-source deep learning splicing prediction algorithm that has
demonstrated in the past few years its high ability to predict splicing defects caused by DNA …

Accurate proteome-wide missense variant effect prediction with AlphaMissense

J Cheng, G Novati, J Pan, C Bycroft, A Žemgulytė… - Science, 2023 - science.org
The vast majority of missense variants observed in the human genome are of unknown
clinical significance. We present AlphaMissense, an adaptation of AlphaFold fine-tuned on …

The next-generation Open Targets Platform: reimagined, redesigned, rebuilt

D Ochoa, A Hercules, M Carmona… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Open Targets Platform (https://platform. opentargets. org/) is an open source
resource to systematically assist drug target identification and prioritisation using publicly …

Polygenic architecture of rare coding variation across 394,783 exomes

DJ Weiner, A Nadig, KA Jagadeesh, KK Dey, BM Neale… - Nature, 2023 - nature.com
Both common and rare genetic variants influence complex traits and common diseases.
Genome-wide association studies have identified thousands of common-variant …

[HTML][HTML] Imputation of low-coverage sequencing data from 150,119 UK Biobank genomes

S Rubinacci, RJ Hofmeister, B Sousa da Mota… - Nature Genetics, 2023 - nature.com
The release of 150,119 UK Biobank sequences represents an unprecedented opportunity
as a reference panel to impute low-coverage whole-genome sequencing data with high …

[HTML][HTML] Refining the impact of genetic evidence on clinical success

EV Minikel, JL Painter, CC Dong, MR Nelson - Nature, 2024 - nature.com
The cost of drug discovery and development is driven primarily by failure, with only about
10% of clinical programmes eventually receiving approval,–. We previously estimated that …

[HTML][HTML] The cell type composition of the adult mouse brain revealed by single cell and spatial genomics

J Langlieb, NS Sachdev, KS Balderrama, NM Nadaf… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The function of the mammalian brain relies upon the specification and spatial positioning of
diversely specialized cell types. Yet, the molecular identities of the cell types, and their …

[PDF][PDF] The Type 2 Diabetes Knowledge Portal: An open access genetic resource dedicated to type 2 diabetes and related traits

MC Costanzo, M von Grotthuss, J Massung, D Jang… - Cell metabolism, 2023 - cell.com
Associations between human genetic variation and clinical phenotypes have become a
foundation of biomedical research. Most repositories of these data seek to be disease …

[HTML][HTML] Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank

RJ Hofmeister, DM Ribeiro, S Rubinacci, O Delaneau - Nature Genetics, 2023 - nature.com
Phasing involves distinguishing the two parentally inherited copies of each chromosome
into haplotypes. Here, we introduce SHAPEIT5, a new phasing method that quickly and …

[HTML][HTML] The molecular cytoarchitecture of the adult mouse brain

J Langlieb, NS Sachdev, KS Balderrama, NM Nadaf… - Nature, 2023 - nature.com
The function of the mammalian brain relies upon the specification and spatial positioning of
diversely specialized cell types. Yet, the molecular identities of the cell types and their …