cis-Regulatory Elements in Plant Development, Adaptation, and Evolution

AP Marand, AL Eveland, K Kaufmann… - Annual review of …, 2023 - annualreviews.org
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …

Organization and regulation of gene transcription

P Cramer - Nature, 2019 - nature.com
The regulated transcription of genes determines cell identity and function. Recent structural
studies have elucidated mechanisms that govern the regulation of transcription by RNA …

Local and global regulation of transcription initiation in bacteria

DF Browning, SJW Busby - Nature Reviews Microbiology, 2016 - nature.com
Gene expression in bacteria relies on promoter recognition by the DNA-dependent RNA
polymerase and subsequent transcription initiation. Bacterial cells are able to tune their …

Principles for integrative structural biology studies

MP Rout, A Sali - Cell, 2019 - cell.com
Integrative structure determination is a powerful approach to modeling the structures of
biological systems based on data produced by multiple experimental and theoretical …

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …

Massively parallel assays and quantitative sequence–function relationships

JB Kinney, DM McCandlish - Annual review of genomics and …, 2019 - annualreviews.org
Over the last decade, a rich variety of massively parallel assays have revolutionized our
understanding of how biological sequences encode quantitative molecular phenotypes …

Structural basis of three different transcription activation strategies adopted by a single regulator SoxS

J Shi, L Wang, A Wen, F Wang, Y Zhang… - Nucleic Acids …, 2022 - academic.oup.com
Transcription activation is established through extensive protein–protein and protein–DNA
interactions that allow an activator to engage and remodel RNA polymerase. SoxS, a global …

[HTML][HTML] Mechanisms and biotechnological applications of transcription factors

H He, M Yang, S Li, G Zhang, Z Ding, L Zhang… - Synthetic and systems …, 2023 - Elsevier
Transcription factors play an indispensable role in maintaining cellular viability and finely
regulating complex internal metabolic networks. These crucial bioactive functions rely on …

Structural basis of dual activation of cell division by the actinobacterial transcription factors WhiA and WhiB

M Lilic, NA Holmes, MJ Bush, AK Marti… - Proceedings of the …, 2023 - National Acad Sciences
Studies of transcriptional initiation in different bacterial clades reveal diverse molecular
mechanisms regulating this first step in gene expression. The WhiA and WhiB factors are …

The essential activities of the bacterial sigma factor

MC Davis, CA Kesthely, EA Franklin… - Canadian journal of …, 2017 - cdnsciencepub.com
Transcription is the first and most heavily regulated step in gene expression. Sigma (σ)
factors are general transcription factors that reversibly bind RNA polymerase (RNAP) and …