An introduction to B‐cell epitope mapping and in silico epitope prediction

L Potocnakova, M Bhide… - Journal of immunology …, 2016 - Wiley Online Library
Identification of B‐cell epitopes is a fundamental step for development of epitope‐based
vaccines, therapeutic antibodies, and diagnostic tools. Epitope‐based antibodies are …

[HTML][HTML] An overview of bioinformatics tools for epitope prediction: implications on vaccine development

RE Soria-Guerra, R Nieto-Gomez… - Journal of biomedical …, 2015 - Elsevier
Exploitation of recombinant DNA and sequencing technologies has led to a new concept in
vaccination in which isolated epitopes, capable of stimulating a specific immune response …

Identification of conformational B-cell Epitopes in an antigen from its primary sequence

HR Ansari, GPS Raghava - Immunome research, 2010 - Springer
Background One of the major challenges in the field of vaccine design is to predict
conformational B-cell epitopes in an antigen. In the past, several methods have been …

Antigen–antibody interface properties: Composition, residue interactions, and features of 53 non-redundant structures

T Ramaraj, T Angel, EA Dratz, AJ Jesaitis… - Biochimica et Biophysica …, 2012 - Elsevier
The structures of protein antigen–antibody (Ag–Ab) interfaces contain information about how
Ab recognize Ag as well as how Ag are folded to present surfaces for Ag recognition. As …

Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics

SK Dhanda, SS Usmani, P Agrawal… - Briefings in …, 2017 - academic.oup.com
The conventional approach for designing vaccine against a particular disease involves
stimulation of the immune system using the whole pathogen responsible for the disease. In …

Bioinformatics resources and tools for conformational B‐cell epitope prediction

P Sun, H Ju, Z Liu, Q Ning, J Zhang… - … methods in medicine, 2013 - Wiley Online Library
Identification of epitopes which invoke strong humoral responses is an essential issue in the
field of immunology. Localizing epitopes by experimental methods is expensive in terms of …

SAROTUP: scanner and reporter of target‐unrelated peptides

J Huang, B Ru, S Li, H Lin… - BioMed Research …, 2010 - Wiley Online Library
As epitope mimics, mimotopes have been widely utilized in the study of epitope prediction
and the development of new diagnostics, therapeutics, and vaccines. Screening the random …

MimoDB 2.0: a mimotope database and beyond

J Huang, B Ru, P Zhu, F Nie, J Yang… - Nucleic acids …, 2012 - academic.oup.com
Mimotopes are peptides with affinities to given targets. They are readily obtained through
biopanning against combinatorial peptide libraries constructed by phage display and other …

Prediction of immunogenicity of therapeutic proteins: validity of computational tools

CJ Bryson, TD Jones, MP Baker - BioDrugs, 2010 - Springer
Most protein therapeutics have the potential to induce undesirable immune responses in
patients. Many patients develop anti-therapeutic antibodies, which can affect the safety and …

Immunoinformatics: a brief review

N Tomar, RK De - Immunoinformatics, 2014 - Springer
A large volume of data relevant to immunology research has accumulated due to
sequencing of genomes of the human and other model organisms. At the same time, huge …