Non-coding RNAs and their roles in stress response in plants
Eukaryotic genomes encode thousands of non-coding RNAs (ncRNAs), which play crucial
roles in transcriptional and post-transcriptional regulation of gene expression. Accumulating …
roles in transcriptional and post-transcriptional regulation of gene expression. Accumulating …
Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies
VI Maliogka, A Minafra, P Saldarelli, AB Ruiz-García… - Viruses, 2018 - mdpi.com
Perennial crops, such as fruit trees, are infected by many viruses, which are transmitted
through vegetative propagation and grafting of infected plant material. Some of these …
through vegetative propagation and grafting of infected plant material. Some of these …
Virus detection by high-throughput sequencing of small RNAs: Large-scale performance testing of sequence analysis strategies
Recent developments in high-throughput sequencing (HTS), also called next-generation
sequencing (NGS), technologies and bioinformatics have drastically changed research on …
sequencing (NGS), technologies and bioinformatics have drastically changed research on …
Biogenesis, function, and applications of virus-derived small RNAs in plants
C Zhang, Z Wu, Y Li, J Wu - Frontiers in microbiology, 2015 - frontiersin.org
RNA silencing, an evolutionarily conserved and sequence-specific gene-inactivation
system, has a pivotal role in antiviral defense in most eukaryotic organisms. In plants, a class …
system, has a pivotal role in antiviral defense in most eukaryotic organisms. In plants, a class …
Next-generation sequencing and genome editing in plant virology
A Hadidi, R Flores, T Candresse, M Barba - Frontiers in microbiology, 2016 - frontiersin.org
Next-generation sequencing (NGS) has been applied to plant virology since 2009. NGS
provides highly efficient, rapid, low cost DNA, or RNA high-throughput sequencing of the …
provides highly efficient, rapid, low cost DNA, or RNA high-throughput sequencing of the …
Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and …
R Bester, G Cook, JHJ Breytenbach, C Steyn… - Virology Journal, 2021 - Springer
Background High-throughput sequencing (HTS) has been applied successfully for virus and
viroid discovery in many agricultural crops leading to the current drive to apply this …
viroid discovery in many agricultural crops leading to the current drive to apply this …
Grapevine leafroll disease and associated viruses: a unique pathosystem
Grapevine leafroll is the most complex and intriguing viral disease of grapevine (Vitis spp.).
Several monopartite closteroviruses (family Closteroviridae) from grapevines have been …
Several monopartite closteroviruses (family Closteroviridae) from grapevines have been …
Characterization of small RNAs derived from tRNAs, rRNAs and snoRNAs and their response to heat stress in wheat seedlings
Y Wang, H Li, Q Sun, Y Yao - PLoS One, 2016 - journals.plos.org
Small RNAs (sRNAs) derived from non-coding RNAs (ncRNAs), such as tRNAs, rRNAs and
snoRNAs, have been identified in various organisms. Several observations have indicated …
snoRNAs, have been identified in various organisms. Several observations have indicated …
PtRFdb: a database for plant transfer RNA-derived fragments
Transfer RNA-derived fragments (tRFs) represent a novel class of small RNAs (sRNAs)
generated through endonucleolytic cleavage of both mature and precursor transfer RNAs …
generated through endonucleolytic cleavage of both mature and precursor transfer RNAs …
Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving …
Y Jo, H Choi, SM Kim, SL Kim, BC Lee, WK Cho - BMC genomics, 2016 - Springer
Background Next-generation sequencing (NGS) provides many possibilities for plant
virology research. In this study, we performed integrated analyses using plant transcriptome …
virology research. In this study, we performed integrated analyses using plant transcriptome …