Mathematical models for immunology: current state of the art and future research directions

R Eftimie, JJ Gillard, DA Cantrell - Bulletin of mathematical biology, 2016 - Springer
The advances in genetics and biochemistry that have taken place over the last 10 years led
to significant advances in experimental and clinical immunology. In turn, this has led to the …

Dynamic natural killer cell and T cell responses to influenza infection

K Frank, S Paust - Frontiers in cellular and infection microbiology, 2020 - frontiersin.org
Influenza viruses have perplexed scientists for over a hundred years. Yearly vaccines limit
their spread, but they do not prevent all infections. Therapeutic treatments for those …

[HTML][HTML] Time-resolved systems immunology reveals a late juncture linked to fatal COVID-19

C Liu, AJ Martins, WW Lau, N Rachmaninoff, J Chen… - Cell, 2021 - cell.com
COVID-19 exhibits extensive patient-to-patient heterogeneity. To link immune response
variation to disease severity and outcome over time, we longitudinally assessed circulating …

Type I interferon induces CXCL13 to support ectopic germinal center formation

AE Denton, S Innocentin, EJ Carr… - Journal of Experimental …, 2019 - rupress.org
Ectopic lymphoid structures form in a wide range of inflammatory conditions, including
infection, autoimmune disease, and cancer. In the context of infection, this response can be …

Influenza A virus infection impacts systemic microbiota dynamics and causes quantitative enteric dysbiosis

S Yildiz, B Mazel-Sanchez, M Kandasamy… - Microbiome, 2018 - Springer
Background Microbiota integrity is essential for a growing number of physiological
processes. Consequently, disruption of microbiota homeostasis correlates with a variety of …

Host transcriptional response to influenza and other acute respiratory viral infections–a prospective cohort study

Y Zhai, LM Franco, RL Atmar, JM Quarles… - PLoS …, 2015 - journals.plos.org
To better understand the systemic response to naturally acquired acute respiratory viral
infections, we prospectively enrolled 1610 healthy adults in 2009 and 2010. Of these, 142 …

Respiratory viral infections and host responses; insights from genomics

NM Troy, A Bosco - Respiratory research, 2016 - Springer
Respiratory viral infections are a leading cause of disease and mortality. The severity of
these illnesses can vary markedly from mild or asymptomatic upper airway infections to …

Initial symbiont contact orchestrates host-organ-wide transcriptional changes that prime tissue colonization

N Kremer, EER Philipp, MC Carpentier, CA Brennan… - Cell host & …, 2013 - cell.com
Upon transit to colonization sites, bacteria often experience critical priming that prepares
them for subsequent, specific interactions with the host; however, the underlying …

Effects of aging on influenza virus infection dynamics

EA Hernandez-Vargas, E Wilk, L Canini… - Journal of …, 2014 - Am Soc Microbiol
The consequences of influenza virus infection are generally more severe in individuals over
65 years of age (the elderly). Immunosenescence enhances the susceptibility to viral …

Viral kinetic modeling: state of the art

L Canini, AS Perelson - Journal of pharmacokinetics and …, 2014 - Springer
Viral kinetic (VK) modeling has led to increased understanding of the within host dynamics
of viral infections and the effects of therapy. Here we review recent developments in the …