Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

Predicting Genotype× Environment× Management (G× E× M) interactions for the design of crop improvement strategies: integrating breeder, agronomist, and farmer …

M Cooper, CD Messina, T Tang, C Gho… - Plant breeding …, 2022 - Wiley Online Library
Summary Genotype‐by‐environment‐by‐management (G× E× M) interactions for crop
productivity represent both challenges and opportunities for long‐term crop improvement …

Genomic prediction in hybrid breeding: I. Optimizing the training set design

AE Melchinger, R Fernando, C Stricker… - Theoretical and Applied …, 2023 - Springer
Key message Training sets produced by maximizing the number of parent lines, each
involved in one cross, had the highest prediction accuracy for H0 hybrids, but lowest for H1 …

Sparse testing using genomic prediction improves selection for breeding targets in elite spring wheat

SA Atanda, V Govindan, R Singh, KR Robbins… - Theoretical and Applied …, 2022 - Springer
Key message Sparse testing using genomic prediction can be efficiently used to increase
the number of testing environments while maintaining selection intensity in the early yield …

Unraveling the potential of phenomic selection within and among diverse breeding material of maize (Zea mays L.)

TM Weiß, X Zhu, WL Leiser, D Li, W Liu, W Schipprack… - G3, 2022 - academic.oup.com
Genomic selection is a well-investigated approach that facilitates and supports selection
decisions for complex traits and has meanwhile become a standard tool in modern plant …

Influence of the mating design on the additive genetic variance in plant breeding populations

T Lanzl, AE Melchinger, CC Schön - Theoretical and Applied Genetics, 2023 - Springer
Key message Mating designs determine the realized additive genetic variance in a
population sample. Deflated or inflated variances can lead to reduced or overly optimistic …

Climate and genetic data enhancement using deep learning analytics to improve maize yield predictability

P Sarzaeim, F Muñoz-Arriola… - Journal of experimental …, 2022 - academic.oup.com
Despite efforts to collect genomics and phenomics ('omics') and environmental data,
spatiotemporal availability and access to digital resources still limit our ability to predict …

[HTML][HTML] Heuristic analysis of genomic sequence processing models for high efficiency prediction: A statistical perspective

AR Durge, DD Shrimankar, AD Sawarkar - Current Genomics, 2022 - ncbi.nlm.nih.gov
Genome sequences indicate a wide variety of characteristics, which include species and
sub-species type, genotype, diseases, growth indicators, yield quality, etc. To analyze and …

Opinionated views on genome-assisted inference and prediction during a pandemic

D Gianola - Frontiers in Plant Science, 2021 - frontiersin.org
Genome-assisted prediction of complex (eg, quantitative) traits is an ingredient of “Genomic
Selection,” a paradigm adopted successfully in animals and plants of agricultural …

Theoretical and experimental assessment of genome-based prediction in landraces of allogamous crops

AC Hölker, M Mayer, T Presterl… - Proceedings of the …, 2022 - National Acad Sciences
Discovery and enrichment of favorable alleles in landraces are key to making them
accessible for crop improvement. Here, we present two fundamentally different concepts for …