Application of computational biology and artificial intelligence in drug design

Y Zhang, M Luo, P Wu, S Wu, TY Lee, C Bai - International journal of …, 2022 - mdpi.com
Traditional drug design requires a great amount of research time and developmental
expense. Booming computational approaches, including computational biology, computer …

Rational design of particle mesh Ewald compatible Lennard-Jones parameters for+ 2 metal cations in explicit solvent

P Li, BP Roberts, DK Chakravorty… - Journal of chemical …, 2013 - ACS Publications
Metal ions play significant roles in biological systems. Accurate molecular dynamics (MD)
simulations on these systems require a validated set of parameters. Although there are more …

K-means on commodity GPUs with CUDA

B Hong-Tao, H Li-Li, O Dan-Tong… - 2009 WRI World …, 2009 - ieeexplore.ieee.org
K-means algorithm is one of the most famous unsupervised clustering algorithms. Many
theoretical improvements for the performance of original algorithms have been put forward …

Numerical characterization of nonlinear dynamical systems using parallel computing: The role of GPUs approach

FI Fazanaro, DC Soriano, R Suyama, MK Madrid… - … in Nonlinear Science …, 2016 - Elsevier
The characterization of nonlinear dynamical systems and their attractors in terms of invariant
measures, basins of attractions and the structure of their vector fields usually outlines a task …

Novel computer architectures and quantum chemistry

MS Gordon, G Barca, SS Leang, D Poole… - The Journal of …, 2020 - ACS Publications
Electronic structure theory (especially quantum chemistry) has thrived and has become
increasingly relevant to a broad spectrum of scientific endeavors as the sophistication of …

Discovery of new selective human aldose reductase inhibitors through virtual screening multiple binding pocket conformations

L Wang, Q Gu, X Zheng, J Ye, Z Liu, J Li… - Journal of chemical …, 2013 - ACS Publications
Aldose reductase reduces glucose to sorbitol. It plays a key role in many of the
complications arising from diabetes. Thus, aldose reductase inhibitors (ARI) have been …

Air pollution modelling using a Graphics Processing Unit with CUDA

F Molnar Jr, T Szakaly, R Meszaros, I Lagzi - Computer Physics …, 2010 - Elsevier
The Graphics Processing Unit (GPU) is a powerful tool for parallel computing. In the past
years the performance and capabilities of GPUs have increased, and the Compute Unified …

Robust parafoil terminal guidance using massively parallel processing

J Rogers, N Slegers - Journal of Guidance, Control, and Dynamics, 2013 - arc.aiaa.org
Terminal guidance of autonomous parafoils is a difficult problem in which wind uncertainty
and system underactuation are major challenges. Existing strategies almost exclusively use …

Multiparticle collision dynamics: GPU accelerated particle-based mesoscale hydrodynamic simulations

E Westphal, SP Singh, CC Huang, G Gompper… - Computer Physics …, 2014 - Elsevier
Abstract The Compute Unified Device Architecture (CUDA) programming language on a
graphics processing unit (GPU) is exploited to develop a GPU-based simulation program for …

Multi-agent traffic simulation with CUDA

D Strippgen, K Nagel - 2009 International Conference on High …, 2009 - ieeexplore.ieee.org
Today's graphics processing units (GPU) have tremendous resources when it comes to raw
computing power. The simulation of large groups of agents in transport simulation has a …