Mass spectrometry-based proteomics

R Aebersold, M Mann - Nature, 2003 - nature.com
Recent successes illustrate the role of mass spectrometry-based proteomics as an
indispensable tool for molecular and cellular biology and for the emerging field of systems …

The assembly of prokaryotic ribosomes

KH Nierhaus - Biochimie, 1991 - Elsevier
The targets of in vivo studies of the ribosomal assembly process are mainly the events of
rRNA processing, whereas in vitro studies (total reconstitution) focus on principls of the …

Chemistry-based functional proteomics reveals novel members of the deubiquitinating enzyme family

A Borodovsky, H Ovaa, N Kolli, T Gan-Erdene… - Chemistry & biology, 2002 - cell.com
The ubiquitin (Ub)-proteasome system includes a large family of deubiquitinating enzymes
(DUBs). Many members are assigned to this enzyme class by sequence similarity but …

A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A. Z into euchromatin

MS Kobor, S Venkatasubrahmanyam… - PLoS …, 2004 - journals.plos.org
The conserved histone variant H2A. Z functions in euchromatin to antagonize the spread of
heterochromatin. The mechanism by which histone H2A is replaced by H2A. Z in the …

Fast-response proteomics by accelerated in-gel digestion of proteins

J Havliš, H Thomas, M Šebela… - Analytical chemistry, 2003 - ACS Publications
Kinetics of in-gel digestion of proteins by modified and native trypsins was studied by MALDI
TOF mass spectrometry using 18O-labeled peptides as internal standards. The effect of the …

Identification of protein‐protein interactions using in vivo cross‐linking and mass spectrometry

J Vasilescu, X Guo, J Kast - Proteomics, 2004 - Wiley Online Library
The purification of protein complexes can be accomplished by different types of affinity
chromatography. In a typical immunoaffinity experiment, protein complexes are captured …

An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation

V Rubio, Y Shen, Y Saijo, Y Liu, G Gusmaroli… - The Plant …, 2005 - Wiley Online Library
Tandem affinity purification (TAP) strategies constitute an efficient approach for protein
complex purification from many different organisms. However, the application of such …

Applications of affinity chromatography in proteomics

WC Lee, KH Lee - Analytical biochemistry, 2004 - Elsevier
Affinity chromatography is a powerful protein separation method that is based on the specific
interaction between immobilized ligands and target proteins. Peptides can also be …

A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana

J Van Leene, H Stals, D Eeckhout, G Persiau… - Molecular & Cellular …, 2007 - ASBMB
Defining protein complexes is critical to virtually all aspects of cell biology because many
cellular processes are regulated by stable protein complexes, and their identification often …

The interaction network of the chaperonin CCT

C Dekker, PC Stirling, EA McCormack, H Filmore… - The EMBO …, 2008 - embopress.org
The eukaryotic cytosolic chaperonin containing TCP‐1 (CCT) has an important function in
maintaining cellular homoeostasis by assisting the folding of many proteins, including the …