Phylogenetic analysis of global hepatitis E virus sequences: genetic diversity, subtypes and zoonosis
L Lu, C Li, CH Hagedorn - Reviews in medical virology, 2006 - Wiley Online Library
Nucleotide sequences from a total of 421 HEV isolates were retrieved from Genbank and
analysed. Phylogenetically, HEV was classified into four major genotypes. Genotype 1 was …
analysed. Phylogenetically, HEV was classified into four major genotypes. Genotype 1 was …
Deciphering ancient rapid radiations
JB Whitfield, PJ Lockhart - Trends in ecology & evolution, 2007 - cell.com
A deeper phylogenetic understanding of ancient patterns of diversification would contribute
to solving many problems in evolutionary biology, yet many of these phylogenies remain …
to solving many problems in evolutionary biology, yet many of these phylogenies remain …
Independent infections of porcine deltacoronavirus among Haitian children
JA Lednicky, MS Tagliamonte, SK White, MA Elbadry… - Nature, 2021 - nature.com
Coronaviruses have caused three major epidemics since 2003, including the ongoing SARS-
CoV-2 pandemic. In each case, the emergence of coronavirus in our species has been …
CoV-2 pandemic. In each case, the emergence of coronavirus in our species has been …
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era
Abstract IQ-TREE (http://www. iqtree. org, last accessed February 6, 2020) is a user-friendly
and widely used software package for phylogenetic inference using maximum likelihood …
and widely used software package for phylogenetic inference using maximum likelihood …
A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins
Butterflies are a diverse and charismatic insect group that are thought to have evolved with
plants and dispersed throughout the world in response to key geological events. However …
plants and dispersed throughout the world in response to key geological events. However …
Key innovations and the diversification of Hymenoptera
The order Hymenoptera (wasps, ants, sawflies, and bees) represents one of the most
diverse animal lineages, but whether specific key innovations have contributed to its …
diverse animal lineages, but whether specific key innovations have contributed to its …
New methods to calculate concordance factors for phylogenomic datasets
We implement two measures for quantifying genealogical concordance in phylogenomic
data sets: the gene concordance factor (gCF) and the novel site concordance factor (sCF) …
data sets: the gene concordance factor (gCF) and the novel site concordance factor (sCF) …
Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths
Butterflies and moths (Lepidoptera) are one of the major superradiations of insects,
comprising nearly 160,000 described extant species. As herbivores, pollinators, and prey …
comprising nearly 160,000 described extant species. As herbivores, pollinators, and prey …
Evolutionary history of the Hymenoptera
Summary Hymenoptera (sawflies, wasps, ants, and bees) are one of four mega-diverse
insect orders, comprising more than 153,000 described and possibly up to one million …
insect orders, comprising more than 153,000 described and possibly up to one million …
Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2
Spatiotemporal bias in genome sampling can severely confound discrete trait
phylogeographic inference. This has impeded our ability to accurately track the spread of …
phylogeographic inference. This has impeded our ability to accurately track the spread of …