Small RNA-omics for plant virus identification, virome reconstruction, and antiviral defense characterization

MM Pooggin - Frontiers in microbiology, 2018 - frontiersin.org
RNA interference (RNAi)-based antiviral defense generates small interfering RNAs that
represent the entire genome sequences of both RNA and DNA viruses as well as viroids …

[HTML][HTML] Tropical fruit virus resistance in the era of next-generation plant breeding

MS Vieira, RLR Cabral, L Favaratto, LS Maciel… - SynBio, 2024 - mdpi.com
Plant viral diseases constitute a major contributor to agricultural production losses,
significantly impacting the economies of exporting countries by more than USD 30 billion …

Virus detection by high-throughput sequencing of small RNAs: Large-scale performance testing of sequence analysis strategies

S Massart, M Chiumenti, K De Jonghe… - …, 2019 - Am Phytopath Society
Recent developments in high-throughput sequencing (HTS), also called next-generation
sequencing (NGS), technologies and bioinformatics have drastically changed research on …

Ribosome shunting, polycistronic translation, and evasion of antiviral defenses in plant pararetroviruses and beyond

MM Pooggin, LA Ryabova - Frontiers in microbiology, 2018 - frontiersin.org
Viruses have compact genomes and usually translate more than one protein from
polycistronic RNAs using leaky scanning, frameshifting, stop codon suppression or …

MISIS-2: A bioinformatics tool for in-depth analysis of small RNAs and representation of consensus master genome in viral quasispecies

J Seguin, P Otten, L Baerlocher, L Farinelli… - Journal of virological …, 2016 - Elsevier
In most eukaryotes, small RNA (sRNA) molecules such as miRNAs, siRNAs and piRNAs
regulate gene expression and repress transposons and viruses. AGO/PIWI family proteins …

A new genus of alphasatellites associated with banana bunchy top virus in Southeast Asia

V Guyot, TD Trieu, O Insisiengmay, T Zhang… - Virus …, 2024 - academic.oup.com
Autonomously replicating alphasatellites (family Alphasatellitidae) are frequently associated
with plant single-stranded (ss) DNA viruses of the families Geminiviridae, Metaxyviridae, and …

Small RNA-Omics for Virome Reconstruction and Antiviral Defense Characterization in Mixed Infections of Cultivated Solanum Plants

S Turco, V Golyaev, J Seguin, C Gilli… - Molecular Plant …, 2018 - Am Phytopath Society
In plants, RNA silencing–based antiviral defense generates viral small RNAs (sRNAs)
faithfully representing the viral genomes. We employed sRNA sequencing and …

Characterization by small RNA sequencing of Taro bacilliform CH virus (TaBCHV), a novel badnavirus

SA Kazmi, Z Yang, N Hong, G Wang, Y Wang - PLoS One, 2015 - journals.plos.org
RNA silencing is an antiviral immunity that regulates gene expression through the
production of small RNAs (sRNAs). In this study, deep sequencing of small RNAs was used …

Interactions of Rice tungro bacilliform pararetrovirus and its protein P4 with plant RNA-silencing machinery

R Rajeswaran, V Golyaev, J Seguin… - Molecular plant …, 2014 - Am Phytopath Society
Small interfering RNA (siRNA)-directed gene silencing plays a major role in antiviral
defense. Virus-derived siRNAs inhibit viral replication in infected cells and potentially move …

Diseases caused by viruses.

DR Jones - Handbook of diseases of banana, abacá and …, 2019 - cabidigitallibrary.org
This chapter describes viral diseases of banana (Musa and Ensete), providing information
on their economic impact, distribution, history, symptoms, causal agent, disease cycle and …